BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1538.p (408 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino a... 258 4e-70 gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino a... 160 1e-40 gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 120 1e-28 gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino a... 105 4e-24 gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 77 2e-15 >gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 258 bits (659), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 170/382 (44%), Positives = 226/382 (59%), Gaps = 62/382 (16%) Query: 77 PRQQRAALVLLLLAALVWPF----FGSRGYVDVMTLALIYVVLGLGLNIVVGFAGLLDLG 132 PR+ + L+L+L ALV+PF FG+ +V +M AL+Y++L LGLN+VVGFAGLLDLG Sbjct: 11 PRKAYSGLLLILAIALVFPFIAQNFGNS-WVRIMDFALLYIMLALGLNVVVGFAGLLDLG 69 Query: 133 YVGFYAVGAYTYAL-------------CNQY----------FG---------LSFWECVP 160 Y+ FYA+GAY AL NQY FG LS W VP Sbjct: 70 YIAFYAIGAYLTALLASPQFAVVLESFVNQYPAIGETLLWVFGPEIAQNGIHLSLWAIVP 129 Query: 161 LSAAAAALFGFLLGFPVLRLRGDYLAIVTLGFGEIIRLLLNNLT---SITGGPDGISGIP 217 L+A A FG LLG P L+LRGDYLAIVTLGFGEIIR+ +NNL +IT GP GI+ I Sbjct: 130 LAALVAGFFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNGPVNITNGPQGINMID 189 Query: 218 KPTVFGLVMARNPVTEGGTTFHQVFGLSYQGGHMVIFMYFLALLMVLFTYFVTSRLLRMP 277 +FG+ + E G+ + G Y + + YFL L + + F++ RL Sbjct: 190 PIRIFGVSLN----GEAGSRATVMIG-DYAMPSVNAY-YFLFLFLCIAIIFISVRLQNSR 243 Query: 278 MGRAWEALREDEIACRSLGINPTRVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIE 337 +GRA+ A+REDEIA +++GIN VKL AF +GA+F G+AG+ FA+ QG V+PESF+ E Sbjct: 244 LGRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGIAGAMFASFQGFVSPESFSLTE 303 Query: 338 SALILAIVVLGGMGSQLGVILAAILLTVLPELARSFAE----------------YRMLIF 381 S +LA+VVLGGMG GV+L I+L LPE+ R E R L++ Sbjct: 304 SIAVLAMVVLGGMGHIPGVVLGGIILAALPEVLRHVVEPLQQSLFGEVLIDAEVLRQLLY 363 Query: 382 GLVMVLMMMWRPQGLLPATRPH 403 GL MVL+M++RP GL P+ + Sbjct: 364 GLAMVLIMLYRPSGLWPSPKSE 385 >gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 387 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 110/335 (32%), Positives = 187/335 (55%), Gaps = 17/335 (5%) Query: 64 TASIKLPALPRLAPRQQRAALVLLLLAALVWPFFGSRGYVDVMTLALIYVVLGLGLNIVV 123 T I+ A R P R +VL LLA LV F+ S + ++ L+Y +GL + Sbjct: 58 TQRIEQAAASR--PGLARIWMVLGLLA-LVAAFYDSHFVLMMICAVLLYSTACMGLTLQF 114 Query: 124 GFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAALFGFLLGFPVLRLRGD 183 GF G+ + F+ +G+YT A+ + GL + +S AA+ G +L PVLR RG Sbjct: 115 GFVGVANFAGAAFFGIGSYTTAVLATHTGLPQLANIAISGVVAAIIGSVLILPVLRTRGH 174 Query: 184 YLAIVTLGFGEIIRLLLNNLTSITGGPDGISGIPKPTVFGLVMARNPVTEGGTTFHQVFG 243 Y A+VT+ FG + + + + + GGP G+ +P +FG + EG T +FG Sbjct: 175 YAALVTIAFGILFKTFIE-VNDVLGGPQGLQ-VPGMQLFG-----HAFNEGFT----LFG 223 Query: 244 LSYQGGHMVIFMYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLGINPTRVK 303 + + + L+L++ + + L R +G + + +R DE A + G++ R K Sbjct: 224 IEFS---FYVSYVLLSLVICAGAFVLVKALERSWVGLSMDVVRTDETAAATFGLHIARWK 280 Query: 304 LSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGVILAAILL 363 + AFT+G FAG+AGS + G + P +FTF +S L+++I +LGG+G+ +G+I AAI++ Sbjct: 281 VIAFTMGNLFAGIAGSVYGMMVGFIAPNNFTFSDSLLLVSIAILGGLGNPVGLIPAAIIV 340 Query: 364 TVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLP 398 +LPE + EYR+L++ +++ ++++RP+GLLP Sbjct: 341 LMLPEKLQFIQEYRVLLYAALVIAILLFRPEGLLP 375 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 161/305 (52%), Gaps = 34/305 (11%) Query: 111 IYVVLGLGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECV-PLSAAA---- 165 I+V+ + LN+++G+ G L LG+V F+ +GAYT +L + F ++ W PL A Sbjct: 35 IFVIAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLLSLGFDVTLWGMTEPLVVTAKPVW 94 Query: 166 ---------AALFGFLLGFPVLRLRGDYLAIVTLGFGEIIRLLLNNLTSITGGPDGISGI 216 AA+ G+LLG R+RG Y IVT+ F +++R++ N +T GP ++ I Sbjct: 95 VSFACGIAFAAIAGWLLGKLAFRVRGAYFVIVTISFAQVMRMVSLNWVDLTEGPMALNNI 154 Query: 217 PKPTVFGLVMARNPVTEGGTTFHQVFGLSYQGGHMVIFMYFLALLMVLFTYFVTSRLLRM 276 P T++ G LS Y+L L + + +Y + + ++ Sbjct: 155 PALTMW---------VPGEGVIDLASKLS---------TYWLVLAVAVVSYLLVAAIVHS 196 Query: 277 PMGRAWEALREDEIACRSLGINPTRVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFI 336 +GRA ALRE+E RS+GI T A A AG AG +A ++ P+ F F+ Sbjct: 197 RIGRAMIALRENETLARSVGIRVTHYLGIATIFAAGIAGAAGGLYAHTVRIIDPDVFMFM 256 Query: 337 ESALILAIVVLGGMGSQLGVILAAILLTVLPELARSFA--EYRMLIFGLVMVLMMMWRPQ 394 + +++ +V++GG G+ G ++ +L +LPE+ R E + +I+G++M+ ++++ P+ Sbjct: 257 FTIMMVIMVIVGGKGTLAGPVVGGLLFGLLPEVLRGVVSPEIQWMIYGVLMIAVLVFMPK 316 Query: 395 GLLPA 399 G++P+ Sbjct: 317 GVVPS 321 >gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 343 Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 89/311 (28%), Positives = 150/311 (48%), Gaps = 24/311 (7%) Query: 95 PFFGSRGYVDVMTLALIYVVLGLGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLS 154 P F S+ Y+ ++ Y V+ LG N++ G+ GLL G+ F A+GAY A G+ Sbjct: 44 PLFVSQYYMTLLIPFFAYAVILLGFNLLFGYGGLLSFGHALFIAIGAYAAAAMVAKTGMI 103 Query: 155 FWECVPLSAAAAALFGFLLGFPVL----RLRGDYLAIVTLGFGEIIRLLLNNLTSITGGP 210 +E + L+A A+ F++ P+ R G + ++TL FG + LN ITGG Sbjct: 104 SFEMMLLTAVVAS---FIISIPIAWLASRFTGIFFGMLTLSFGMLFHSFLNKFYYITGGD 160 Query: 211 DGISGIPKPTVFGLVMARNPVTEGGTTFHQVFGLSYQGGHMVIFMYFLALLMVLFTYFVT 270 G+ +P+P++FG+ + + T ++ GG Y+ L+MVL +V Sbjct: 161 SGMR-VPRPSLFGMELDQFDKT------------AFLGGPF----YYYCLVMVLLLTWVM 203 Query: 271 SRLLRMPMGRAWEALREDEIACRSLGINPTRVKLSAFTLGAAFAGLAGSFFAARQGLVTP 330 R++R P G A R++ I LG+ V+ AF + A +A + G GL P Sbjct: 204 WRIVRSPYGIHLMASRDNAIKALYLGVKIRSVRAIAFVVSAVYASIGGVILGVNTGLADP 263 Query: 331 ESFTFIESALILAIVVLGGMGSQLGVILAAILLTVLPELARSFAEYRMLIFGLVMVLMMM 390 E + S ++ + VLGG LG +L A + +L + S +Y G ++ ++++ Sbjct: 264 ELAYWTHSGHLVFMAVLGGYQEFLGPVLGAFVFILLQDELSSLTQYWRFFLGAILAILVV 323 Query: 391 WRPQGLLPATR 401 P G++ A R Sbjct: 324 VLPGGIMGAIR 334 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 144/299 (48%), Gaps = 32/299 (10%) Query: 104 DVMTLALIYVVLGLGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSA 163 + + L Y +LG+GL ++ G +++ + YA+GAY FG++F+ + ++A Sbjct: 10 NALVLGSTYALLGIGLTLIFGIMRVVNFAHGELYALGAYVAYGVVAMFGMNFFGSLIVAA 69 Query: 164 AAAALFGFLLGFPVLRLRG----DYLAIVTLGFGEIIRLLLNNLTSITGGPDGISGIPKP 219 LFG + + +LR R D + ++ +G + +++ N + G S +P P Sbjct: 70 IVGFLFGTAIEYFLLRRRDLKAIDEVMLIMIG----VMIIMQNAELLMWGGVAKS-VPSP 124 Query: 220 TVFGLVMARNPVTEGGTTFHQVFGLSYQGGHMVIFMYFLALLMVLFTYFVTSRLLRMPMG 279 ++ P+ G + + + + + LALL++ + SRL G Sbjct: 125 ------FSQEPIVWGAISVSPI--------RLFVLVTALALLVIFYLLIERSRL-----G 165 Query: 280 RAWEALREDEIACRSLGINPTRVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESA 339 A A +D+ A + +G+N + V F LG+ A +AG+ A +VTP + + S Sbjct: 166 LAMRATFQDKDAAKIVGVNVSHVYTLTFALGSCLASVAGALLAPVF-VVTP-TMGDLASL 223 Query: 340 LILAIVVLGGMGSQLGVILAAILLTVLPELARSF--AEYRMLIFGLVMVLMMMWRPQGL 396 AIV+LGG+G+ G L +L ++ E + YR + LV++ +M++RPQGL Sbjct: 224 KAFAIVILGGLGNLPGAALGGFILAIVEEFGAGYISTAYRDALGFLVILAVMIFRPQGL 282 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.144 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 754,338 Number of extensions: 27376 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 10 Length of query: 408 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 323 Effective length of database: 906,776 Effective search space: 292888648 Effective search space used: 292888648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)