BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1537.p (305 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC t... 202 2e-53 gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 160 6e-41 gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC t... 151 5e-38 gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t... 110 8e-26 gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino a... 93 2e-20 >gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 202 bits (515), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/310 (44%), Positives = 196/310 (63%), Gaps = 23/310 (7%) Query: 7 QQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIG-VQSGYP 65 QQ++NGL LG++YAL+A+GYTMVYG++ +INFAHG++ MI + GL L + V P Sbjct: 6 QQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTVAPDLP 65 Query: 66 ----LPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQNYVQI 121 L + + GA+ V V V L +ERVAYR LR PRL PLI+AIG+SI LQ + Sbjct: 66 GIVKLIIAILGAIPVCVAVNVL----IERVAYRRLRNAPRLAPLITAIGVSILLQTLAMM 121 Query: 122 GQGARDMSVPVLISGALEFQMGSDFTVTVPYSRMVIVGVTLALMVALTLFIARSRMGRAC 181 G + P + MG+ + P M+++ +A M L L I ++RMGRA Sbjct: 122 IWGRSPIPFPQEMPTEPLHIMGALIS---PTQVMLLILAAVA-MGLLVLLIEKTRMGRAM 177 Query: 182 RACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGIKAFT 241 RA +E+ +A L+G+D+N+VI TF +GA+LAA+ GV+ A +GF+ G+KAF+ Sbjct: 178 RATSENPRVAGLMGVDSNRVIVMTFAIGAILAAIAGVMWAANYSSAQFAMGFVPGLKAFS 237 Query: 242 AAVLGGIGSIPGAMLGGVLLGLAETFAAGY--------LPSEYKDVVSFGLLVLILLFRP 293 AAVLGGIG+I GAMLGG+LLGL E+ AGY L S Y+D+ +F +L+++L RP Sbjct: 238 AAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRP 297 Query: 294 TGLLGK--PD 301 +G++G+ PD Sbjct: 298 SGIMGERVPD 307 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 160 bits (406), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 107/298 (35%), Positives = 176/298 (59%), Gaps = 17/298 (5%) Query: 2 LPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIGVQ 61 + QL Q +N L LG+ YAL+ IG T+++GI+ ++NFAHGE+Y + +YV A GV Sbjct: 1 MDQLLQHTLNALVLGSTYALLGIGLTLIFGIMRVVNFAHGELYALGAYV------AYGVV 54 Query: 62 SGYPLPLLLGGALIVSVLVTGLYGWTVER--VAYRPLRGGPRLVPLISAIGMSIFLQNYV 119 + + + G+LIV+ +V L+G +E + R L+ ++ ++ IG+ I +QN Sbjct: 55 AMFGMNFF--GSLIVAAIVGFLFGTAIEYFLLRRRDLKAIDEVMLIM--IGVMIIMQNAE 110 Query: 120 QIGQGARDMSVPVLISGALEFQMGSDFTVTVPYSRMVIVGVTLALMVALTLFIARSRMGR 179 + G SVP S G+ ++V R+ ++ LAL+V L I RSR+G Sbjct: 111 LLMWGGVAKSVPSPFSQE-PIVWGA---ISVSPIRLFVLVTALALLVIFYLLIERSRLGL 166 Query: 180 ACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGIKA 239 A RA +D A ++G++ + V + TF LG+ LA+V G L+A + + P +G +A +KA Sbjct: 167 AMRATFQDKDAAKIVGVNVSHVYTLTFALGSCLASVAGALLA-PVFVVTPTMGDLASLKA 225 Query: 240 FTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLL 297 F +LGG+G++PGA LGG +L + E F AGY+ + Y+D + F +++ +++FRP GL Sbjct: 226 FAIVILGGLGNLPGAALGGFILAIVEEFGAGYISTAYRDALGFLVILAVMIFRPQGLF 283 >gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 151 bits (381), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 95/314 (30%), Positives = 178/314 (56%), Gaps = 15/314 (4%) Query: 2 LPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIGVQ 61 + ++ Q + NGL LG IYA++A+G+T+ +G++ +I F+HG+ M+ ++ GL T + + Sbjct: 1 MSEIGQYVFNGLMLGMIYAMVAVGFTLFFGVLDVIKFSHGDTLMVGAFAGLTASTGVLML 60 Query: 62 SGYPLPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQNYVQI 121 + L ++ +V VTGL G + + PL P L L++ + + ++ V++ Sbjct: 61 DISSPWIRLLAVVLSAVCVTGLLGAAIAKFLILPLHKAPPLNTLLATLMLGTVMRESVRL 120 Query: 122 --GQGARDMSVPVLI-SGALEFQMGSDFTVTVPYSRMVIVGVTLALMVALTLFIARSRMG 178 G+ P L+ +G+++ T+ + ++++ LA++ + I R+R+G Sbjct: 121 FYPDGSNSKPFPSLLPTGSVDIG-----TLALRADNVILLISGLAIIAGVHFLITRTRLG 175 Query: 179 RACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGIK 238 A RA A+D A L+GI+ V+ TF LG+ +AA+ GV+ L ++N +G + G+ Sbjct: 176 MAIRAVAQDGETARLMGINFEAVVLLTFALGSGMAALAGVMNGLYYNEINFNVGLLLGVI 235 Query: 239 AFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYL-------PSEYKDVVSFGLLVLILLF 291 F+AA+LGG+G+I GA+LGG L + + L PS YKDV +F ++++++ + Sbjct: 236 GFSAAILGGLGNIYGAILGGFLFAALQVLGSALLPALIPNIPSAYKDVFAFAVVIILMAW 295 Query: 292 RPTGLLGKPDIEKV 305 +PTGL+ + E+V Sbjct: 296 KPTGLIAEKSSERV 309 >gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 293 Score = 110 bits (276), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 157/296 (53%), Gaps = 14/296 (4%) Query: 9 LVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIGVQSGYP--- 65 L+ G+ A+ L+A G +++G+ +IN A G IY + +Y G + +T+ + G P Sbjct: 8 LLAGIFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFG-IFVTSWALSKGLPVHL 66 Query: 66 LPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQNYVQIGQGA 125 P +L GA IV GL G +ER+ R + P L+ + + Q+ ++ GA Sbjct: 67 FPFVLLGAGIV----IGLIGIPLERL-IRTIYNRPESFQLLLTFAVMLMFQDVLRFFWGA 121 Query: 126 RDMSVPVLISGALEFQMGSDFTVTVPYSRMVIVGVTLALMVALTLFIARSRMGRACRACA 185 +P + ++ F S F V++P ++++ V + L + + F+ +++ G+ RA A Sbjct: 122 DPQQLP---NVSMTFGTMSAFGVSMPTYNVMVIAVAVTLAIGMAYFLGKTKTGKILRATA 178 Query: 186 EDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGIKAFTAAVL 245 E+ + +GI+ +V F LG ML +GG L+ + + +G ++AF V+ Sbjct: 179 ENRETSAAMGINVTRVYVMVFTLGTMLGTIGGALV-IPNAAASLEMGVELVVEAFAVVVI 237 Query: 246 GGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLLGKPD 301 GG+GS+ GA +G +++GL +A Y P E + + + +++ +L+++P GL GK + Sbjct: 238 GGLGSMKGAAVGALIVGLIRALSAMYYP-EAEILAIYAIVLAVLIWKPAGLYGKAE 292 >gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 538 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 153/296 (51%), Gaps = 14/296 (4%) Query: 8 QLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIGVQSGYPLP 67 +L G+SLG++ L A+G + +G++G+IN AHGE+ MI +Y V + Sbjct: 245 KLFYGISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPEAID 304 Query: 68 LLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQNYVQIGQGARD 127 L AL + +V G +ER+ R L G P L L+ G+S+ L V+ GA++ Sbjct: 305 AYLLVALPAAFIVAAAVGIALERLVIRWLYGRP-LETLLCTWGISLILMQGVRSIFGAQN 363 Query: 128 MSV--PVLISGALEFQMGSDFTVTVPYSRMVIVGVTLALMVALTLFIARSRMGRACRACA 185 + V P +SG + +GS + + Y+R+VI+ L +++A+ L + ++R+G RA Sbjct: 364 VEVANPSWMSGGVTV-LGS---LVLSYNRIVIIFFALFVVLAVWLILNKTRLGLFVRAVM 419 Query: 186 EDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGIKAFTAAVL 245 ++ MA +G+ T K+ TF LG +A +GGV ++ +G + P +G + +F VL Sbjct: 420 QNRRMAACVGVSTGKIDMMTFGLGCGIAGLGGVALS-QLGNVGPDLGQGYIVDSFMVVVL 478 Query: 246 GGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLF---RPTGLLG 298 GG+G + G ++ LG F P + +LV I++F RP GL Sbjct: 479 GGVGQLAGTVIAAFGLGEVNKFLE---PVAGAVLAKIAILVFIIIFIQKRPQGLFA 531 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.145 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 656,348 Number of extensions: 26263 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 11 Length of query: 305 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 222 Effective length of database: 914,170 Effective search space: 202945740 Effective search space used: 202945740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)