BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1536.p (376 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino a... 183 2e-47 gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino a... 172 2e-44 gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino a... 108 8e-25 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 84 1e-17 gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-bin... 75 5e-15 >gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 381 Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 197/375 (52%), Gaps = 13/375 (3%) Query: 1 MKFASRLTKIALAAATFAGLAASAGLAQADTVKIAIAGPLTGAVAQYGDMVKAGALTAIE 60 M+F +++ I L A LA S LAQ VKI GP+TG A G + GA A+E Sbjct: 1 MQFKTKM--IPLTGAVLLALAGST-LAQEQIVKIGHVGPVTGTDAHMGKDNENGARLAVE 57 Query: 61 QINAAGGA-NGNKFEAVLM--DDGCEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDI 117 ++NA G NG K + M DD +PKQA A A K+V + VIGH+ SG+TIPAS I Sbjct: 58 ELNAKGVVINGKKVKLQYMPEDDAADPKQATAAATKLVDSNVAVVIGHLNSGATIPASRI 117 Query: 118 YENEGVVMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKIKPKKVAVLHDK 177 Y N G+V I+PS+T+P+ T+ + K FR + D Q G +Y ++ + K VAV+ D+ Sbjct: 118 YANAGIVQISPSSTSPKYTQ-QGFKTAFRVVANDAQLGRVLGQYAVKSLAAKNVAVIDDR 176 Query: 178 QSYGQGVAASVKSALEAAKVPVVLFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMG 237 +YGQGVA ++AA VV + N +D++AI+T +K++ D ++FGG G Sbjct: 177 TAYGQGVAEEFAKGVKAAGGTVVASQYTNNKATDFNAILTAIKAKKPDVIFFGGMDAVGG 236 Query: 238 LIMRQAREQGVKAVFMGPEGVGNKDITAIAGPA-SEGMLVTLPADFAADPANAALVKAFA 296 +++Q ++ G+ A FMG +G+ + +AG E + A D A L K F Sbjct: 237 PMLQQMKQLGINAKFMGGDGICTGSLPGLAGAGLGENNVYCAEAGGVEDARKAGLDK-FR 295 Query: 297 AAKRDANG----PFQMPAYSAVKIIADAITGAKSTDPDKVAAYIHANSFKTPIGNVEYDK 352 AA + G AY A + DA+ AKS + K + S+ G + +D Sbjct: 296 AAYKKRFGIDVIYTAAYAYDATYAVVDAMQKAKSWESAKYLPELTKISYPGVTGTIAFDA 355 Query: 353 KGDLKAFKFVVFTWH 367 KGD+K ++T+ Sbjct: 356 KGDIKDGTLTLYTYR 370 >gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 376 Score = 172 bits (437), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 191/366 (52%), Gaps = 27/366 (7%) Query: 20 LAASAGLAQAD---TVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAAG---GANGNKF 73 +A+++ L QA TVKI +A PLTG A YG + GA A++++N G +F Sbjct: 12 IASASTLVQAQEVQTVKIGLAAPLTGPQAFYGKDSQNGARLAVDELNEKKIVVGGKQLRF 71 Query: 74 EAVLMDDGCEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAP 133 E + DD +PKQ AVA + + VIGH SG+ IPA+ IY G+ ++PSAT+P Sbjct: 72 ELLSEDDAADPKQGAAVAQRFCDLHVNAVIGHTNSGTAIPAARIYHQCGLPNLSPSATSP 131 Query: 134 QLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKIKPKKVAVLHDKQSYGQGVAASVKSALE 193 +LT++ + FR + D A A Y + +K K +AV+ D+ +YGQG+A + ++AL Sbjct: 132 ELTKSA-YNTTFRMLANDSTLAQALAAYTVNVLKLKTIAVVDDRSAYGQGLADAFRTALR 190 Query: 194 AAKVPVVLFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGV-KAVF 252 V VV + N D+SAI+T +K + D V+FGG P+ ++RQ + G+ + F Sbjct: 191 NTPVQVVTQQYTNDKAVDFSAILTAIKGRNPDAVFFGGMDPQGSAMLRQMEQLGLTRQKF 250 Query: 253 MGPEGVGNKDITAIAGPASEGM-----LVTLPADFAADPANAALVKAFAAAKRDAN---G 304 +G +G+ + + +EGM LV + A D A+ A KR G Sbjct: 251 IGGDGICTQGMEQ----RTEGMKIQDNLVCAHSGIALDRTTASR----AWKKRYDEKFPG 302 Query: 305 PFQMP---AYSAVKIIADAITGAKSTDPDKVAAYIHANSFKTPIGNVEYDKKGDLKAFKF 361 FQM +Y AV +A A+ A S +P K + F + NV++D +G++K Sbjct: 303 QFQMHGPYSYDAVLAVAKAMQAANSVEPQKYLPAMGKVHFAGVMSNVQFDARGEIKNPTI 362 Query: 362 VVFTWH 367 ++T+ Sbjct: 363 SIYTYQ 368 >gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 391 Score = 108 bits (269), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 99/332 (29%), Positives = 146/332 (43%), Gaps = 18/332 (5%) Query: 30 DTVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAAGGANGNKFEAVLMDDGCEPKQAVA 89 D VKIA GPLTG V+ G + A A+ NA A ++ V DD C P V Sbjct: 30 DVVKIAFVGPLTGGVSSIGLGGRNSADLAVRLRNADPKAK-YTYQLVTQDDECRPNVGVQ 88 Query: 90 VANKIVS-QGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFIFRTI 148 VA KI + + I + H CS + +Y G+ +I A P++T K + R Sbjct: 89 VATKIAADKSIVAGVTHFCSAVAMGTVGVYNRFGLPVIVWGAVLPEITYGNDFKEVHRVN 148 Query: 149 GRDDQQGPAAARYVIEKIKPKKVAVLHDKQSYGQGVAASVKSALEAAKVPVVLFEGINAG 208 G Q AA+++I K KK A++HD YG+G ++ V+ G+ A Sbjct: 149 GTMINQSEVAAKFMISK-GYKKWAIIHDTTDYGKGHNKYFSEFVKKNGGTVLSTFGVTAD 207 Query: 209 DSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGVKAVFMGPEGV-GNKDITAIA 267 D++ +TK++ D VYFGG P I Q + G+KA F G G+ + I + Sbjct: 208 QQDFTTELTKIRELKPDVVYFGGLTPLGVRIRTQMEKLGIKAQFEGTSGIKSDAYIQGVG 267 Query: 268 GPASEGMLVTLP-ADFAADPANAALVKAFAAAKR----DANGPFQMPAYSAVKIIADAIT 322 +EG L + A + P + K +A GPF A++A +I DA+ Sbjct: 268 EKVAEGSLSFIEGAPWEKIPGGLFFTAKYQLQKYSEPPEAYGPF---AFAAANLIMDAV- 323 Query: 323 GAKSTDPDKVAAYIHANSFK---TPIGNVEYD 351 + PD+ N K T IG V +D Sbjct: 324 --EKVGPDRKKVRDVLNQTKDVDTLIGKVTFD 353 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 100/360 (27%), Positives = 164/360 (45%), Gaps = 20/360 (5%) Query: 9 KIALAAAT-FAGLAASAGLAQADTVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAAGG 67 K +LAA A AA++ AQ +T+KI + PLTG VA G V GA A + +N GG Sbjct: 6 KKSLAACIGLAMFAATSAYAQ-ETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNGG 64 Query: 68 ANGNKFEAVLMDDGCEPKQAV-AVANKIVSQGIKYVIGHVCSGSTI---PASDIYENEGV 123 G K + V+ D+ P++AV +V I+ + ++G S T+ P YE V Sbjct: 65 VLGKKIQLVIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYE---V 121 Query: 124 VMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKIKP--KKVAVLHDKQSYG 181 ++ +A++ ++T A + ++FRT + A ++ VI+ P KK L +G Sbjct: 122 PLVVEAASSSKITTAG-NPWVFRTSPTSAMEAQAFSK-VIDGYNPAIKKADFLVVNNDWG 179 Query: 182 QGVAASVKSALEAAKVPVVLFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMR 241 G A K LEA + + E + +D SA + LK G D V+ ++ L +R Sbjct: 180 LGAAVEFKKMLEAKGIAIGRTETMTPDMTDLSAQLAALKGSGSDTVFVTSGIEQLTLAIR 239 Query: 242 QAREQGVKAVFMGPEGVGNKDITAIAGP---ASEGMLVTLPA--DFAADPANA-ALVKAF 295 QA EQ + + G + + GP S+ +L P + A PA A A + + Sbjct: 240 QAGEQRLPQRIITTGGAFPEPLLKTPGPKGYVSQHLLFFAPWAPERAKHPAVAKAFMDGW 299 Query: 296 AAAKRDANGPFQ-MPAYSAVKIIADAITGAKSTDPDKVAAYIHANSFKTPIGNVEYDKKG 354 + + G + + A+ IA+AI A +P + + K G++ + K G Sbjct: 300 KSRGLELAGQVEGFRGFDAILTIAEAIKLAGKAEPAAIRDALWKVQVKGTNGDIAFSKVG 359 >gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-binding precursor signal peptide protein [Janthinobacterium sp. Marseille] Length = 410 Score = 75.5 bits (184), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 89/387 (22%), Positives = 153/387 (39%), Gaps = 43/387 (11%) Query: 6 RLTKIALAAATFAGLAASAGLAQADTVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAA 65 R+ + L+AA A SA + A+ V+IA PL+G A G + T E N Sbjct: 4 RIPSLILSAA----FALSASHSFAENVRIAFIDPLSGPFAPVGQNLLHSFQTIAELSNQK 59 Query: 66 GGANGNKFEAVLMDDGCEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEG--- 122 N E V D+ P++++ + QG +Y+ SG + D Sbjct: 60 QWGGSNTVEIVGFDNKGSPQESLIQLKSAIDQGYRYITQGNGSGVALALIDAINKHNERN 119 Query: 123 ----VVMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKIKPKKVAVLHDKQ 178 V+ + SA P LT +K + FR + + + ++ + KK+ V+ Sbjct: 120 PGKEVLFLNHSAGDPALTNSKCSFWHFRFDANSEMKMESLTTFMAKDPNIKKIYVIGQNY 179 Query: 179 SYGQGVAASVKSALEAAKVPVVLFEGINAGD----SDYSAIVTKLKSQGVDFVYFGGYHP 234 + GQ ++ S ++ + K P V G + D+S V K+K+ G D + + Sbjct: 180 ALGQEISRSTRAYM-GRKRPDVQIVGDDLHPIGQVKDFSPYVAKMKASGADTIITANWGA 238 Query: 235 EMGLIMRQAREQGVKAVF-------------MGPEGVGNKDITAIAGPASEGMLVTLPAD 281 ++ L+++ AR+ +KA F MG G+ A +E Sbjct: 239 DLALLVKAARDADLKANFYTLYAATTGVPTAMGAAGLDRVKYVAYWNLNNETY------- 291 Query: 282 FAADPANAALVKAFAAAKRDANGPFQMPAYSAVKIIADAITGAKSTDPDKVAAYIHANSF 341 A +++ F K+ + + M +Y+ + ++ A A STDP KVA + Sbjct: 292 -----AGKEIIEGF--KKKYNDDYYAMASYTVLAMLGKAFKEAGSTDPLKVALAMEGMKV 344 Query: 342 KTPIGNVEYDKKGDLKAFKFVVFTWHK 368 K+ G VE K + TW K Sbjct: 345 KSLNGEVEMRKSDHQAQQPLYIATWVK 371 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.131 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 752,849 Number of extensions: 29307 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 8 Length of query: 376 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 291 Effective length of database: 906,776 Effective search space: 263871816 Effective search space used: 263871816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)