BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1534.p
         (288 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982890|ref|YP_001351775.1| hypothetical protein mma_0085 [...   191   3e-50

>gi|152982890|ref|YP_001351775.1| hypothetical protein mma_0085
           [Janthinobacterium sp. Marseille]
          Length = 237

 Score =  191 bits (486), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 124/210 (59%), Gaps = 8/210 (3%)

Query: 56  VITAANPVPCTRLSTVSFDYTDFDGATRQ-GSVVVLDAVAPQVESLFGELLLRSFPLASA 114
           V+    PV C +L  V F Y DFDG  R  G ++VL AVA  V+++F  LL R FP+A A
Sbjct: 6   VLQKDAPVTCAQLRIVQFSYLDFDGKLRNDGEIMVLAAVAEHVQAIFDTLLQRKFPIARA 65

Query: 115 RGLEQFDGDDQRSMQANNSSAFNGRPMTGGGGWSKHAYGAAIDINPQQNPYVSQAGSPTQ 174
           R ++ + GDD  SM+ NN+SAFN R +T G   S HAYG AIDINP QNP++        
Sbjct: 66  RLMDHYRGDDVASMRDNNTSAFNDRRITNGKAASLHAYGVAIDINPVQNPFLQFEADGKA 125

Query: 175 QVLPPQGAAYLQRNPVQP------GMAEDVVGVFYDHGFLVWGGHWKQPIDYQHFEIGSR 228
              PP G+ Y  R  V+P      GMAEDVV VF  HGFL WGG+W  PIDYQHF++ +R
Sbjct: 126 AYSPPIGSKYANRLAVRPGKATRQGMAEDVVEVFAQHGFLGWGGNWDAPIDYQHFQV-NR 184

Query: 229 GFITTLASLPKAQARAEFERYVAGYRQCIH 258
                L +LP   AR  F  YV  YR C+ 
Sbjct: 185 TLAERLLALPVPDARKVFNAYVERYRSCVQ 214


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 598,018
Number of extensions: 25410
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 206
Effective length of database: 917,867
Effective search space: 189080602
Effective search space used: 189080602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)