BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1533.p (311 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981632|ref|YP_001352505.1| cys regulon transcriptional act... 491 e-140 gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-... 345 2e-96 gi|152981629|ref|YP_001351947.1| cys regulon transcriptional act... 325 2e-90 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 92 3e-20 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 84 8e-18 >gi|152981632|ref|YP_001352505.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 308 Score = 491 bits (1263), Expect = e-140, Method: Compositional matrix adjust. Identities = 232/305 (76%), Positives = 264/305 (86%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 MNFQQLRSIRE ARCG+NLTEVANVLFTSQPGVSRQIRELEEELGV+IFERNGKRLTGLT Sbjct: 1 MNFQQLRSIRETARCGYNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 +PG+GIL I++RLLLEAENL+RAS+EYAG++ GTL++ATTHTQARY+LP+VVQ FR FP Sbjct: 61 DPGRGILQIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPKVVQVFRKEFP 120 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLG 180 +VRIALQQS PEHIAEWV+SGKADIGIATEGLSQF++LVSFPCY W H +VVP GHPLL Sbjct: 121 KVRIALQQSTPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHHSVVVPDGHPLLE 180 Query: 181 LEQVSLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 + ++L DL + LITYD+GFTGRGHIDEAF+QA I DIVLTAMDSDVIQQYV L +GV Sbjct: 181 KKLITLADLAQYSLITYDLGFTGRGHIDEAFKQADITTDIVLTAMDSDVIQQYVLLNLGV 240 Query: 241 GLVASMAVDQGKHQEMVAIQASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPDLKRADI 300 G+VASMA+ Q + I ASHLF N+ RLAVRRGAYLR Y +DFIQQFAPDL RADI Sbjct: 241 GIVASMALQQNGSNGLKVIDASHLFAQNVTRLAVRRGAYLRQYTYDFIQQFAPDLTRADI 300 Query: 301 VNALN 305 A+ Sbjct: 301 DEAMK 305 >gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-like protein [Janthinobacterium sp. Marseille] Length = 313 Score = 345 bits (885), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 160/305 (52%), Positives = 214/305 (70%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 MN QLR +REA R FNLTE A LFTSQPGVS+ I ELEEELGV+IF R+GKR+ GLT Sbjct: 1 MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 EPG+ +L VE ++ E + L+R E+A SG+ +IATTHTQARY LP+VVQAF FP Sbjct: 61 EPGRAVLKSVELIMQEIDGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFP 120 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLG 180 +VR++L Q P+ +A+ V+ +AD+ IATE ++ + L+S PCY W H +VVP HPLL Sbjct: 121 KVRLSLLQGNPKQVADMVLMDQADLAIATESIASIEGLISLPCYQWEHQVVVPVDHPLLK 180 Query: 181 LEQVSLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 + ++LE+L +PLITYD F GR ID AF ++PDI+L A+D+DVI+ YV LGMG+ Sbjct: 181 SKSITLEELTAYPLITYDSAFAGRNKIDHAFALRNLKPDILLEAIDADVIKTYVELGMGI 240 Query: 241 GLVASMAVDQGKHQEMVAIQASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPDLKRADI 300 G++A MA D + + + AI A HLF N++R+A+++GAYLR Y F FI+ P L R + Sbjct: 241 GIIAGMAFDAERDKNLRAIPAGHLFGTNVSRVALKQGAYLRSYVFTFIELLTPTLNRKLV 300 Query: 301 VNALN 305 LN Sbjct: 301 EQVLN 305 >gi|152981629|ref|YP_001351947.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 304 Score = 325 bits (834), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 154/304 (50%), Positives = 218/304 (71%), Gaps = 1/304 (0%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 MNFQQLR +REA R NLTEVA VL+TSQ GVS+QI++LE+ELG+++F R+GKRLT +T Sbjct: 1 MNFQQLRFVREAIRNNLNLTEVAAVLYTSQSGVSKQIKDLEDELGIDLFVRSGKRLTSVT 60 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 G G + IV+R+LLE ENLRR + +Y+G +G L IA THTQARY LPRVV+ F + FP Sbjct: 61 RAGDGAVEIVKRILLETENLRRYASQYSGVDTGQLIIAATHTQARYTLPRVVEQFNNEFP 120 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLG 180 +V++ L Q P +A + +G+ADIGIA+E L Q +++++PC++W+H ++VP GHPL Sbjct: 121 KVKLELHQGTPNQVAAMISNGEADIGIASEVLDQSPDILAYPCFSWNHQVIVPLGHPLTK 180 Query: 181 LEQVSLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 V+LED+ +PLITY+ FTGR +D AF QAG+ PD LTAMD+DVI+ YV G+GV Sbjct: 181 KAPVTLEDIAQYPLITYNPQFTGRKCVDAAFSQAGLVPDFRLTAMDADVIKTYVERGLGV 240 Query: 241 GLVASMAVDQGKHQEMVAIQAS-HLFKANIARLAVRRGAYLRGYAFDFIQQFAPDLKRAD 299 G+VA MA+D + + ++ LF + +AVR G +L +A+ F++ FAP+L+ D Sbjct: 241 GIVAEMALDGIEKIGLTVLETEGTLFGSCTTLVAVRNGTFLPSFAYRFLETFAPNLRLED 300 Query: 300 IVNA 303 + +A Sbjct: 301 LKSA 304 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 92.4 bits (228), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 6/223 (2%) Query: 26 LFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLTEPGKGILGIVERLLLEAENLRRASK 85 L +QP +S+ I+ LE LGV++F R R LT G +L +R+L + L + Sbjct: 27 LHMTQPPLSQSIQALEALLGVQLFRRTS-RSVALTPAGIALLPEAQRILQQTAALPDLMR 85 Query: 86 EYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFPQVRIALQQSAPEHIAEWVISGKADI 145 A SG LS+A T VLP ++ FR+A+PQV I L+++ + + + G+ D+ Sbjct: 86 RAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQVEIDLREATTDVQLDELAQGRIDV 145 Query: 146 GIATEGLSQFK--ELVSFPCYTWSHVIVVPKG-HPLLGLEQVSLEDLGTWPLITYDVGFT 202 G+ L +L P + ++ VPKG + G + V+L+ + PLI + Sbjct: 146 GLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAVRGKQTVALQAVAELPLIIFPRRIA 205 Query: 203 GRGH--IDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGVGLV 243 H I +R AG+ P I A+ I VS GMG+ LV Sbjct: 206 PAFHDAILACYRDAGLTPHIGQEAIQMQTIIGLVSAGMGIALV 248 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 84.3 bits (207), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 13/295 (4%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 M + LR AA+ + T + L +QP +S QI+++E+ELG+++F+R G R+ LT Sbjct: 1 MELRHLRYFLAAAQSQ-SFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVG-RVVKLT 58 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 G+ +R LLE + A E + G ++ + + LP ++ F +P Sbjct: 59 TAGELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYP 118 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLG 180 ++I + + I E ++ G G+A S +++ P +T +VV HPL+G Sbjct: 119 GIKITVLRLRSGEIEERLLDGDLHFGVAYAP-SSTEQINVEPLFTVPLALVVGDHHPLVG 177 Query: 181 LEQVSLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 ++L +L L+ + R +D GI P IV+ + I V Sbjct: 178 SAGITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATVRHSSLA 237 Query: 241 GLVASMAVDQ--GKHQEMVAIQASHLFKANIARLAVRRGAYLRGYA---FDFIQQ 290 ++++ VD+ G HQ + +H L RR ++L A D I+Q Sbjct: 238 TILSANLVDEMPGLHQVPLTPTVTH-----TVGLFTRRNSHLSAAARALVDTIRQ 287 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 651,809 Number of extensions: 25682 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 18 Length of query: 311 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 228 Effective length of database: 914,170 Effective search space: 208430760 Effective search space used: 208430760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)