BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1532.p (359 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 611 e-176 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 244 5e-66 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 179 3e-46 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 165 5e-42 gi|152980121|ref|YP_001354989.1| ABC transport system ATP-bindin... 160 1e-40 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 611 bits (1576), Expect = e-176, Method: Compositional matrix adjust. Identities = 297/353 (84%), Positives = 323/353 (91%) Query: 1 MSIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL 60 MSIEV +IQK+FG+F ALN+VSL+FPAGELTALLGPSGCGKTTLLRIIAGLE PD GQVL Sbjct: 1 MSIEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKKL 120 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRV+P + RPSE+ I+EKV KL Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKL 120 Query: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 181 RLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNV 240 RLHD+LHVTSIFVTHDQEEALEVADQ+VLMNKG VEQIG P+ VYN+PASPFVYGFLGNV Sbjct: 181 RLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFLGNV 240 Query: 241 NLFHGRLHEGVLDAGGARFEAPGHDDIRDAAGVGFVRPHDLDVERYTPGAQGIVVQLRRA 300 NLFHGR+HEG+L + G FEAP H + +D G+G+VRPHDL+V+RYT GA+GIVVQLRRA Sbjct: 241 NLFHGRVHEGILQSSGIAFEAPEHAETQDTKGIGYVRPHDLEVDRYTTGAEGIVVQLRRA 300 Query: 301 HAIGPLAQLELARDDNAELIEAVIPNERFAQLGLKNGETLVVRPRRLQVFAQQ 353 HAIGPLAQLEL RDDN ELIEAVI NERF L LK GETL+VRP+RLQVF + Sbjct: 301 HAIGPLAQLELERDDNGELIEAVISNERFGHLKLKEGETLIVRPKRLQVFVDE 353 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 244 bits (623), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 126/266 (47%), Positives = 180/266 (67%), Gaps = 6/266 (2%) Query: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 +E+ ++ +RFG T ++++SL+ AGE LLGPSGCGKTTLLR+IAG + PD+GQ+LLD Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILLD 63 Query: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKKLLE 122 G D + +R V VFQ+YALF HMTV NIAF L + +A I++KV + LE Sbjct: 64 GVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMA----NTPKAEIQKKVDEALE 119 Query: 123 LVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRL 182 V+L A RYP +LSGGQRQR+++ARAL P++LLLDEP ALDA++R++++ L L Sbjct: 120 DVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINL 179 Query: 183 HDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNVNL 242 E+ +T I+VTHDQ EAL ++ ++ +MNKGQVEQ+ P +Y++P S FV F+G NL Sbjct: 180 QKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIGTCNL 239 Query: 243 FHGRLHEGVLDAGGARFEAPGHDDIR 268 F G + + +D + PG ++ Sbjct: 240 FDGVVTQ--IDGNMMWLDVPGMGAVK 263 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 179 bits (454), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 101/225 (44%), Positives = 141/225 (62%), Gaps = 10/225 (4%) Query: 18 LNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLDGEDAS-ARHV---RE 73 ++ +S GE+ LLG SGCGKTT+LR IAG ES +G++ L G++ S A+H Sbjct: 30 VHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTVPEA 89 Query: 74 RQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKKLLELVQLDWLADRY 133 R VG VFQ YALF H++V +NI FGLR ++R ++ KLL LV L ++ Sbjct: 90 RHVGVVFQDYALFPHLSVSDNIGFGLRKLAAAERNG------RINKLLALVGLQAQEKKF 143 Query: 134 PPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFV 193 P +LSGGQ+QR+ALARALA +P +LLLDEPF LD +R+ L +R + E+ T++ V Sbjct: 144 PHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLV 203 Query: 194 THDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLG 238 THDQ EA +ADQ+ +M G + Q +Y+ PA+ FV F+G Sbjct: 204 THDQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVADFIG 248 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 165 bits (417), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 145/241 (60%), Gaps = 10/241 (4%) Query: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 I + +++K +GS L + ++ GE+ A++G SG GK+TLLR I GLES D G + + Sbjct: 4 IAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISVA 63 Query: 63 GEDASARHVRER----QVGFVFQHYALFKHMTVFENIAFG-LRVKPRSQRPSEAVIREKV 117 G + R +VG +FQ + LF H++V NI + VK S++ + A+ Sbjct: 64 GSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARAL----A 119 Query: 118 KKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 K LE V L D +P QLSGGQ+QR+A+ARAL++EP+ LL DE ALD ++ E+ Sbjct: 120 MKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLN 179 Query: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFL 237 +R L E +T I VTH+ A EV D+VV M++G+V +IG PE ++ +PA+P + FL Sbjct: 180 VVRGLAHE-GMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFL 238 Query: 238 G 238 G Sbjct: 239 G 239 >gi|152980121|ref|YP_001354989.1| ABC transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 267 Score = 160 bits (404), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 142/240 (59%), Gaps = 9/240 (3%) Query: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 +E+ + +G L++++++FP G++ A++G SG GKTT+LR+I G P +GQV +D Sbjct: 5 VEIRDLHFAYGERPILSELNMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLRPQAGQVTVD 64 Query: 63 GE-----DASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKV 117 G+ D A + R++G +FQH ALF ++VFEN+AF LR SE +IR+ V Sbjct: 65 GQVVHELDTKAVYQLRRKMGMLFQHGALFTDISVFENVAFPLR---EHTGLSEELIRDLV 121 Query: 118 KKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 L V L A P ++SGG +R+ALAR++A++P +++ DEPF LD Sbjct: 122 LMKLHTVGLRNAAQLMPAEISGGMARRVALARSIALDPELIMYDEPFAGLDPISMGMTAN 181 Query: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFL 237 +R+L+D L T+I V+HD E+ +AD V ++KG + GTP A + P+V F+ Sbjct: 182 LIRKLNDALGSTTILVSHDVHESFSIADYVYFLSKGAIVAEGTP-AEMMASSDPYVKQFV 240 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 844,737 Number of extensions: 34718 Number of successful extensions: 310 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 64 Length of query: 359 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 275 Effective length of database: 910,473 Effective search space: 250380075 Effective search space used: 250380075 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)