BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1530.p (295 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980049|ref|YP_001352502.1| sulfate transport system permea... 463 e-132 gi|152980225|ref|YP_001354281.1| sulfate transport system permea... 245 2e-66 gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permea... 144 8e-36 gi|152981039|ref|YP_001354282.1| sulfate transport system permea... 111 6e-26 gi|152981300|ref|YP_001355347.1| molybdate transport system perm... 93 2e-20 >gi|152980049|ref|YP_001352502.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 287 Score = 463 bits (1191), Expect = e-132, Method: Compositional matrix adjust. Identities = 232/287 (80%), Positives = 259/287 (90%), Gaps = 1/287 (0%) Query: 8 LAAPRAAPVRAGGTGRRVLPGFRLSLGFTIFYLALIVLIPLSALFLKTFTLTWAGFVEAV 67 ++A A PVR T RVLPGF LSLGFTIFYL+LIVLIPLSA+FLKTFT++W FV AV Sbjct: 1 MSAVLALPVRKQ-TASRVLPGFNLSLGFTIFYLSLIVLIPLSAVFLKTFTMSWDAFVAAV 59 Query: 68 TSPRVMASYRLSFGASLIAAFLNVIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVA 127 TS RV+ASY+LSFGASLI A LN FGGIVAWVLVRY+FPGK+IIDA+VDLPFALPTAVA Sbjct: 60 TSDRVIASYKLSFGASLIGAVLNAFFGGIVAWVLVRYKFPGKKIIDAMVDLPFALPTAVA 119 Query: 128 GIALTTLYSQNGWLGKLLVPFGIKVAFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELE 187 GIALT LYS NGW+G+ L GIKVAFTPLGV++ALTFIGLPFVVRTVQPVLE+ E+ELE Sbjct: 120 GIALTALYSPNGWIGRYLEAIGIKVAFTPLGVIIALTFIGLPFVVRTVQPVLEDMEKELE 179 Query: 188 EAAASLGASRWQTFARVIFPTIMPALLTGFALAFARASGEYGSVVFIAGNMPMVSEITPL 247 EAAASLGAS WQTF +VIFPT+ PALLTGFALAFARA+GEYGSV+FIAGNMPMVSEITPL Sbjct: 180 EAAASLGASHWQTFTKVIFPTVFPALLTGFALAFARATGEYGSVIFIAGNMPMVSEITPL 239 Query: 248 FIVTKLEQYDYAGATAIAMVMLVVSFILLLTINLLQAWTRKRGQSER 294 FIVTKLEQYDYAGATAIA+VML+ SF++LLTINLLQAWTRKRGQ+E+ Sbjct: 240 FIVTKLEQYDYAGATAIAVVMLLASFLMLLTINLLQAWTRKRGQAEK 286 >gi|152980225|ref|YP_001354281.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 260 Score = 245 bits (626), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 174/238 (73%) Query: 31 LSLGFTIFYLALIVLIPLSALFLKTFTLTWAGFVEAVTSPRVMASYRLSFGASLIAAFLN 90 +S GF+ Y++L++L+P+SAL L ++W + A+T RV+ SY+++ + + + Sbjct: 1 MSFGFSTLYISLVILLPISALLLYVSGMSWDQYWFAITDARVLQSYKITIQGAFYSTIIV 60 Query: 91 VIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLVPFGI 150 G ++AW++ RY FPG+R+ID+LVDLPFALPT+VAGI L+ L+ GWLG+ FGI Sbjct: 61 TFIGFLLAWIITRYDFPGRRLIDSLVDLPFALPTSVAGITLSALFIPTGWLGQWFEIFGI 120 Query: 151 KVAFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFARVIFPTIM 210 K+++ G++VA+TF LPF+VR+VQPVLE+ E+ELEEAA LGA++WQ F RVI PT++ Sbjct: 121 KISYAFPGIVVAMTFTSLPFIVRSVQPVLEDMEKELEEAALMLGANKWQIFWRVILPTLI 180 Query: 211 PALLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDYAGATAIAMVM 268 PAL+TG + AF R+ GE+G+V+ IAGN+P +E+T L + +L++Y+Y A AIA V+ Sbjct: 181 PALITGSSQAFIRSLGEFGAVIMIAGNIPFETEVTSLMLFVRLQEYNYPAAAAIASVV 238 >gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permease protein [Janthinobacterium sp. Marseille] Length = 302 Score = 144 bits (362), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 141/256 (55%), Gaps = 2/256 (0%) Query: 39 YLALIVLIPLSALFLKTFTLTWAGFVEAVTSPRVMASYRLSFGASLIAAFLNVIFGGIVA 98 +L L + +PL+++F + W ++ A+ +++ +L+ + IA LN++FG + Sbjct: 43 FLTLFLFVPLASVFAEALKKGWDAYIAAILEEDAVSAIKLTLLTAAIAVPLNLVFGVAAS 102 Query: 99 WVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLVPFGIKVAFTPLG 158 W + ++ F GK I+ L+DLPF++ ++G+ L+ GW G L IK+ F G Sbjct: 103 WCIAKFDFRGKSILLTLIDLPFSVSPVISGLIYVLLFGAQGWFGGWLQEHNIKILFAVPG 162 Query: 159 VLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFARVIFPTIMPALLTGFA 218 +++A F+ PFV R + P+++ E EEAA LGAS W+TF V P I LL G Sbjct: 163 IVLATIFVTFPFVARELIPLMQSQGSEEEEAALVLGASGWKTFWHVTLPNIKWGLLYGVI 222 Query: 219 LAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDYAGATAIAMVMLVVSFILLLT 278 L ARA GE+G+V ++G++ + PL + +Y ++ A A+A ++ +++ + L Sbjct: 223 LCNARAMGEFGAVSVVSGHIRGQTNTIPLQVEILYNEYQFSAAFAVASLLAMLALVTLAL 282 Query: 279 INLLQAWTRKRGQSER 294 + ++ W R R E+ Sbjct: 283 KSFIE-W-RLRDTHEQ 296 >gi|152981039|ref|YP_001354282.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 283 Score = 111 bits (277), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 128/242 (52%), Gaps = 5/242 (2%) Query: 56 FTLTWAGFVEAVTSPRVMASYRLSFGASLIAAFL----NVIFGGIVAWVLVRYRFPGKRI 111 FT ++G +E + + + + G +L AA L N++FG ++AW + Y F G+R+ Sbjct: 36 FTQAFSGGLELLWANLNEDFMKHALGLTLTAAVLTVPINLVFGILLAWCVTHYDFFGRRL 95 Query: 112 IDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLVPFGIKVAFTPLGVLVALTFIGLPFV 171 + LV++P+A VAG +Y G +GK L +++ F G+++ F+ P++ Sbjct: 96 LVTLVEIPYATSPVVAGFCYLVVYGLEGTIGKWLYANDVQLMFAWPGIIMVTVFVTAPYI 155 Query: 172 VRTVQPVLEEAERELEEAAASLGASRWQTFARVIFPTIMPALLTGFALAFARASGEYGSV 231 R + P++++ E E AA SLGAS WQ F RV P I ALL G + ARA GE+G+V Sbjct: 156 ARILMPLMQKQGTEEEIAALSLGASGWQIFWRVTLPNIKWALLYGAVITNARAVGEFGAV 215 Query: 232 VFIAGNMPMVSEITPLFIVTKLEQYDYAGATAIAMVMLVVSFILLLTINLLQAWTRKRGQ 291 ++G + M +T +V +L A A +L +L L + L W ++R + Sbjct: 216 AVVSGTI-MNQTLTLPLLVEQLNNDYKTAAAFTAAALLACMALLTLVLKTLMEWRQERRE 274 Query: 292 SE 293 +E Sbjct: 275 AE 276 >gi|152981300|ref|YP_001355347.1| molybdate transport system permease protein [Janthinobacterium sp. Marseille] Length = 224 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/200 (33%), Positives = 96/200 (48%), Gaps = 1/200 (0%) Query: 91 VIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLVPFGI 150 ++ G +AW L R R K + A V LP LP V G L NG +G+L G Sbjct: 25 LLIGTPLAWWLARTRSWLKSPVGAFVALPIVLPPTVIGFYLLVALGPNGPVGQLTQAMGF 84 Query: 151 -KVAFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFARVIFPTI 209 + F+ G++V F +PFVV+ +Q E E AA+L AS TF V P Sbjct: 85 GTLPFSFTGLVVGSVFYSMPFVVQPIQNAFEAMGERPLEVAATLRASPLDTFFSVTLPLA 144 Query: 210 MPALLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDYAGATAIAMVML 269 P LT + FA GE+G V+ I GN+P + + + I +E +YA A +A ML Sbjct: 145 KPGYLTAIVMGFAHTVGEFGVVLMIGGNIPNQTRMISVQIYDHVEALEYAQAHWLAAGML 204 Query: 270 VVSFILLLTINLLQAWTRKR 289 V S +L+ + L R++ Sbjct: 205 VFSMAVLIILYTLNPTGRRK 224 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 575,949 Number of extensions: 22086 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 11 Length of query: 295 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 212 Effective length of database: 914,170 Effective search space: 193804040 Effective search space used: 193804040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)