BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1529.p
         (193 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981543|ref|YP_001352435.1| hypothetical protein mma_0745 [...   212   1e-56

>gi|152981543|ref|YP_001352435.1| hypothetical protein mma_0745
           [Janthinobacterium sp. Marseille]
          Length = 183

 Score =  212 bits (540), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/179 (58%), Positives = 129/179 (72%), Gaps = 7/179 (3%)

Query: 15  LSDFRVLVAPGLSDSGPEHWQSRWQRLYPTFERVRQDDWETPDLPRWSARLDEVLARDGR 74
           LSD+RVLV PGL  SGPEHWQSRW+RLYP+F+RV QDDW  PDL RW+ R+ EVL+   +
Sbjct: 6   LSDYRVLVVPGLHGSGPEHWQSRWERLYPSFQRVVQDDWSQPDLARWAQRMTEVLSESDQ 65

Query: 75  PTVIVAHSFGCLTTVHRTAALQAASGSAHPIVAALLVAPADPVKFSLSAAVRH-RLPYPA 133
           PT+IVAHSFGCLTT      +QAAS     +  ALLVAPADP KF +   +R  RLP P+
Sbjct: 66  PTLIVAHSFGCLTT------MQAASNGRFDLAGALLVAPADPEKFGVDDILRDARLPCPS 119

Query: 134 LVIGSDNDPWMSAERGRHWAEAWGAQFRSIGARGHINSESGLGDWTEGQQWLLGLLERI 192
           +VIGS NDPWM++ R  +WA+ WG  F S GA GHIN+ES LGDW +G + L  LL+ +
Sbjct: 120 IVIGSSNDPWMASHRAAYWADIWGCGFLSAGALGHINAESNLGDWEQGLRQLQTLLDMV 178


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.132    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 440,390
Number of extensions: 16275
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 115
Effective length of database: 932,655
Effective search space: 107255325
Effective search space used: 107255325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)