BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1528.p
         (282 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982555|ref|YP_001352434.1| hypothetical protein mma_0744 [...   292   2e-80

>gi|152982555|ref|YP_001352434.1| hypothetical protein mma_0744
           [Janthinobacterium sp. Marseille]
          Length = 283

 Score =  292 bits (747), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/274 (52%), Positives = 194/274 (70%), Gaps = 9/274 (3%)

Query: 1   MAYQALKAYLQRL-DAQHAGAASSSSSSSKVWLDEQGRAAGRFFNTSLTSAFQPVRSFDD 59
           M++ AL+ YL RL DA  A         + +WLD+QGRA GR+FN++LTSAFQP+R+ + 
Sbjct: 1   MSFPALQQYLSRLHDAPQA--------DTTLWLDQQGRAHGRYFNSTLTSAFQPIRTPET 52

Query: 60  GHIVACEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPE 119
           G IV  + F RS+S  D GL +WKLLD  A+D++SVELDRLCR+LHA+N+YRQ      +
Sbjct: 53  GGIVGVQGFMRSYSKNDTGLSIWKLLDTGATDEQSVELDRLCRLLHAVNFYRQPEMVDYD 112

Query: 120 LHLSVHARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRN 179
           L+LSVHARLLAAV++NHG+++RR+L  L LPH++IVLQLP + P+Q WL+NYV DNYRRN
Sbjct: 113 LYLSVHARLLAAVDSNHGMSFRRVLDVLGLPHKKIVLQLPQIQPDQAWLMNYVADNYRRN 172

Query: 180 GFRLGVTANSPLEALGLLDKVKPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVEN 239
           GFRL V A    + L LL++V+PD+IKVD RE+ D  +   LL  A E+ V++ FKRVE+
Sbjct: 173 GFRLAVNAADARQGLDLLEQVQPDVIKVDVREITDEAATLDLLCVAGEKDVKLVFKRVES 232

Query: 240 RQVFDKLAWYCQALAQSTLVQGYLWDVPGARLPE 273
             +++KL        Q+ L QGYLWD P A   +
Sbjct: 233 TAIYEKLRKLGAQAQQTILAQGYLWDQPKASFAQ 266


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 664,506
Number of extensions: 26439
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 200
Effective length of database: 917,867
Effective search space: 183573400
Effective search space used: 183573400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)