BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1526.p (277 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982384|ref|YP_001352432.1| sulfonate/nitrate ABC-type tran... 308 2e-85 gi|152979879|ref|YP_001354308.1| sulfonate/nitrate transport sys... 184 6e-48 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 166 1e-42 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 156 2e-39 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 152 1e-38 >gi|152982384|ref|YP_001352432.1| sulfonate/nitrate ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 277 Score = 308 bits (790), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 182/280 (65%), Positives = 217/280 (77%), Gaps = 6/280 (2%) Query: 1 MRNDTQEHRELGRA--AGRGVGLRLRAVSKAFSGRTVLHDIDLDIAPGEFVAIVGRSGCG 58 M+ + E + L A A RG+ + + ++ K++ GR VL I+L + PGEFVA+VGRSGCG Sbjct: 1 MQINQTEQQALSAAPDARRGIRVAVESLYKSYGGREVLKAIELTLEPGEFVAVVGRSGCG 60 Query: 59 KSTLLRLVAQLDAASGGELIYEHEGAGEPEIRIMFQDARLLPWKRVQANVALGLPRQAAP 118 KSTLLRLVA+L+ A G L + +G PE RIMFQD+RLLPWKRV NVALGLP++ Sbjct: 61 KSTLLRLVAELETADSGTLTF-GDGKTAPETRIMFQDSRLLPWKRVLDNVALGLPKK--D 117 Query: 119 QAVNALRQVGLEQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEM 178 A+ ALRQVGLE+RAGEWPAVLSGGQRQRVALARALVHDP+LLLLDEPLGALDALTRIEM Sbjct: 118 DALQALRQVGLEERAGEWPAVLSGGQRQRVALARALVHDPELLLLDEPLGALDALTRIEM 177 Query: 179 QTLIESLWRERGFTALLVTHDVQEAIALADRVLLIEDGQVALDQRIALARPRSRGQAQFA 238 Q LIE+LW++RGFTALLVTHDVQEAIALADRV+LIEDG++ LD+RI LARPR+RG A FA Sbjct: 178 QQLIETLWQKRGFTALLVTHDVQEAIALADRVVLIEDGRITLDERIPLARPRARGNATFA 237 Query: 239 ALEEAILARVLRHPGSEVVTEPSEA-IFTPRGVQQVQWAV 277 LEE ILA VL+ P S + S + + V Q WAV Sbjct: 238 QLEERILAHVLQIPPSADAQDSSLGDVSLLKTVNQFAWAV 277 >gi|152979879|ref|YP_001354308.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 246 Score = 184 bits (466), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 105/233 (45%), Positives = 136/233 (58%), Gaps = 8/233 (3%) Query: 21 LRLRAVSKAFSGRTVLHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELIYE 80 LRL K F R VL D+ L +A GE V++VG+SGCGKSTLLRL+A LD GE+ + Sbjct: 5 LRLDVREKNFGERNVLQDVSLTLAAGEIVSLVGKSGCGKSTLLRLIAGLDKHYSGEIFLD 64 Query: 81 --HEGAGEPEIRIMFQDARLLPWKRVQANVALGLPRQ------AAPQAVNALRQVGLEQR 132 P+I ++FQ+ RLLPW V NV P Q A P L +VGL + Sbjct: 65 GVKLKCVTPDIGLIFQEPRLLPWLSVAENVGFNRPDQDRSRANANPHVQALLHEVGLSEA 124 Query: 133 AGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRERGFT 192 P LSGG QR A+AR L + P+LLLLDEP A+DA TR+ +Q L+ +L E GF Sbjct: 125 IDSLPKQLSGGMAQRAAIARGLFNQPRLLLLDEPFSAVDAFTRMRLQDLLLALAAEHGFA 184 Query: 193 ALLVTHDVQEAIALADRVLLIEDGQVALDQRIALARPRSRGQAQFAALEEAIL 245 LLVTHD+ EA L+DRVL + G++ D ++ L RPR+R A + IL Sbjct: 185 VLLVTHDIDEAAYLSDRVLTMGQGEIIEDTKVNLPRPRNRHSVDLATARDDIL 237 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 166 bits (421), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 98/250 (39%), Positives = 146/250 (58%), Gaps = 14/250 (5%) Query: 21 LRLRAVSKAFS--GRTV--LHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGE 76 + ++ VSK FS G+TV L +++L I GEFV ++G SGCGKSTLLR++A + S G Sbjct: 14 IDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGS 73 Query: 77 L-IYEHEGAG-EPEIRIMFQDARLLPWKRVQANVALGLPRQAAPQA------VNALRQVG 128 +Y G PE ++FQD L PW V+ N+ G ++ P+A VG Sbjct: 74 ANMYGMPIDGPSPERGMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTDMVG 133 Query: 129 LEQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRE 188 L + A +P LSGG +QRVA+AR L +D ++LL+DEP GALDALTR ++Q + +W Sbjct: 134 LTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEIWER 193 Query: 189 RGFTALLVTHDVQEAIALADRVLLIE--DGQVALDQRIALARPRSRGQAQFAALEEAILA 246 T + VTH V+EA+ L+DRV+++ G++ D ++ LARPR +F + I Sbjct: 194 TKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDLARPRDITAVEFNEIRRDITQ 253 Query: 247 RVLRHPGSEV 256 + H ++V Sbjct: 254 YLTSHVSAKV 263 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 156 bits (394), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/230 (42%), Positives = 135/230 (58%), Gaps = 13/230 (5%) Query: 21 LRLRAVSKAFSGRTVLHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELIYE 80 L +R +++ F TV+ +I L I GEF ++G SGCGK+TLLR++A D G+++ + Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILLD 63 Query: 81 H-EGAGEPE----IRIMFQDARLLPWKRVQANVALGLPRQAAPQAV------NALRQVGL 129 + G P +R +FQ+ L P V N+A L P+A AL V L Sbjct: 64 GVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALEDVRL 123 Query: 130 EQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRER 189 A +P LSGGQRQRV++ARALV P+LLLLDEPL ALDA R +MQ + +L +E Sbjct: 124 TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEV 183 Query: 190 GFTALLVTHDVQEAIALADRVLLIEDGQVA-LDQRIAL-ARPRSRGQAQF 237 G T + VTHD EA+AL+ R+ ++ GQV LD+ + + PRSR A F Sbjct: 184 GITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADF 233 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 152 bits (385), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/211 (42%), Positives = 126/211 (59%), Gaps = 14/211 (6%) Query: 36 LHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELIY-EHEGAG-EPEIRIMF 93 L +++L ++ GEF+ ++G SGCGKSTLL L+A L A+GG L+ E AG PE ++F Sbjct: 28 LTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGMLLCGNREIAGPSPERAVVF 87 Query: 94 QDARLLPWKRVQANVALGLPR---------QAAPQAVNALRQVGLEQRAGEWPAVLSGGQ 144 Q+ LLPW NV L + R + + AL VGL + P +SGG Sbjct: 88 QNHSLLPWLTCYENVYLAVERVFSATESKAELKARTRAALALVGLSHAEQKRPNEISGGM 147 Query: 145 RQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRERGFTALLVTHDVQEAI 204 +QRV +ARAL +P++LL+DEP GALDALTR +Q + + G T ++VTHDV EA+ Sbjct: 148 KQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVDEAV 207 Query: 205 ALADRVLLIEDGQVALDQRI---ALARPRSR 232 L+DR++++ +G A I LARPR R Sbjct: 208 LLSDRIVMLTNGPSATIGEILEVKLARPRER 238 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 583,340 Number of extensions: 22584 Number of successful extensions: 295 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 63 Length of query: 277 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 195 Effective length of database: 917,867 Effective search space: 178984065 Effective search space used: 178984065 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)