BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1525.p (281 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 377 e-106 gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 213 1e-56 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 144 6e-36 gi|152980798|ref|YP_001354173.1| ABC-type sulfonate/nitrate tran... 95 4e-21 gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bica... 94 7e-21 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 377 bits (968), Expect = e-106, Method: Compositional matrix adjust. Identities = 208/272 (76%), Positives = 233/272 (85%), Gaps = 7/272 (2%) Query: 10 PGAATAAQPSAQPKAAAKKSRPQRDAWIGWILPLLLLVWWEIAAQAGWLSSRILPEPFAV 69 PGAA A PS + KK P WI+P+LL+ W+IA+Q GWLSSRILPEPFAV Sbjct: 11 PGAAAAKAPSTWRASGLKKLVP-------WIVPVLLISVWQIASQLGWLSSRILPEPFAV 63 Query: 70 LKAAWQLSASGELWHHLAVSSGRAAAGFAVGAGLGLILGLLSGSLRWAELLLDTTLQMVR 129 KAAW+L+ SGELW H+ VS RA FAVG GLGL+LGLL+G+ + AE LLDTTLQM+R Sbjct: 64 AKAAWELALSGELWTHVKVSLWRATTSFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIR 123 Query: 130 NIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMAKSYGLSG 189 NIPALALIPLVILWFGI+ET+K+FLV+VGVFFPVYLNTFHGIRSVD+GLIEMAKSYGLSG Sbjct: 124 NIPALALIPLVILWFGIEETSKIFLVAVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSG 183 Query: 190 WPLYRDVILPGALPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVL 249 W LYRDVILPGALPSILVG+RF+LGLVWVLLIVAETISAQ+GIGYMTMNAREFLQTDVVL Sbjct: 184 WSLYRDVILPGALPSILVGVRFSLGLVWVLLIVAETISAQSGIGYMTMNAREFLQTDVVL 243 Query: 250 VGILLYALLGKLADTAARALERFWLRWHPGYQ 281 VGILLYALLGKLAD +R LE +WLRWHPGY+ Sbjct: 244 VGILLYALLGKLADVVSRTLEGYWLRWHPGYR 275 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 213 bits (542), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 165/261 (63%), Gaps = 6/261 (2%) Query: 16 AQPSAQPKAAAKKSRPQRDAWIGWILPLLLLVWWEIAAQAGWLSSRILPEPFAVLKAAWQ 75 A +A+P A A+K W+GWILPL +L + E+AAQ GW+ +R+LP P +++ Sbjct: 33 ATTAAEPVAKARKL-----GWLGWILPLAVLGFVEVAAQLGWIQARLLPPPSEIVQTLSA 87 Query: 76 LSASGELWHHLAVSSGRAAAGFAVGAGLGLILGLLSGSLRWAELLLDTTLQMVRNIPALA 135 L G L H++ S R +G+A+GA L ++ GL G + AE + T Q +R IP+LA Sbjct: 88 LLEQG-LLVHISASVARVFSGYAIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLA 146 Query: 136 LIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRD 195 +PL++LWFGIDET K+ L+++G FFP+YL GIR+VD+ LIE+ + YGLS L R Sbjct: 147 WVPLLLLWFGIDETPKITLIAIGAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARR 206 Query: 196 VILPGALPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLY 255 ++LP ALPS+ GLR L L W+ L+ AE I+A GIGY+ + RE + DVVL I L Sbjct: 207 IVLPAALPSLFTGLRNGLSLAWMFLVAAELIAATKGIGYLLTDGRETSRPDVVLAAIFLL 266 Query: 256 ALLGKLADTAARALERFWLRW 276 A+LGKL D + LE L W Sbjct: 267 AILGKLTDGLLKWLETRKLAW 287 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 144 bits (363), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 116/197 (58%) Query: 85 HLAVSSGRAAAGFAVGAGLGLILGLLSGSLRWAELLLDTTLQMVRNIPALALIPLVILWF 144 HL S R GF A +G+ LGLL G ++ LLD TLQ++R +P A +PL +++F Sbjct: 79 HLWKSVTRVYGGFFAAALVGIPLGLLIGRIKVIRDLLDPTLQLLRPVPVTAWLPLSMIFF 138 Query: 145 GIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPS 204 GI A +FLV +G F+P+ NT G+++VD L E A G +G L+R V+LP A+PS Sbjct: 139 GIGPNAAIFLVFLGAFYPIVFNTTFGVKAVDNRLFEAALMLGCNGSSLFRQVVLPAAMPS 198 Query: 205 ILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADT 264 IL GLR G W+L++V E G+G + M+ R +TD+V+ G+++ ++G D Sbjct: 199 ILNGLRLGHGFAWILIVVGEMTGVPEGLGAVIMDGRMLSRTDLVIAGMVVIGIVGYSTDR 258 Query: 265 AARALERFWLRWHPGYQ 281 A+ + L+W P + Sbjct: 259 ILVAINNYLLKWSPQHH 275 >gi|152980798|ref|YP_001354173.1| ABC-type sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 294 Score = 95.1 bits (235), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 125/238 (52%), Gaps = 8/238 (3%) Query: 40 ILPLLLLVWWEIAAQAGWLSSRIL-PEPFAVLKAAWQLSASGELWHHLAVSSGRAAAGFA 98 ++ ++L V WE+ A+ W + +L P A +A + +SGEL + +S G+A Sbjct: 49 VILVVLAVIWEVVAR--WQDNELLLPTFIATAQALVEGISSGELLAKVGISLSVLLQGYA 106 Query: 99 VGAGLGLILGLLSGSLRWAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVG 158 +G IL L+ S + LLDT M+ +PA+AL+PL +LWFGI + +F++ Sbjct: 107 IGVLAAFILTTLAVSTQLGRDLLDTLTSMLNPLPAIALLPLALLWFGIGRGSLVFVLVHS 166 Query: 159 VFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPSILVGLRFALGLVWV 218 V +P+ LNT+ G + V L ++YGL G P +++P ALP+IL GL+ W Sbjct: 167 VLWPMALNTYAGFQGVPDTLRMAGRNYGLRGIPYVLQILVPAALPAILSGLKIGWAFAWR 226 Query: 219 LLIVAETI----SAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAA-RALER 271 LI AE + S + G+G+ R L TD V G+ L+G + + R LE+ Sbjct: 227 TLIAAELVFGASSGKGGLGWYIFQNRNELYTDKVFAGLATVILIGLMVENIVFRTLEK 284 >gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 255 Score = 94.4 bits (233), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 2/237 (0%) Query: 43 LLLLVWWEIAAQAGWLSSRILPEPFAVLKAAWQLSASGELWHHLAVSSGRAAAGFAVGAG 102 +L ++ W+ + W++ LP+PF + A Q +G L + S G +G Sbjct: 20 VLFVLLWKASGFFAWVNPGTLPDPFKLPHAFMQEWTAGRLLPAIGSSLVHYFWGLGLGTL 79 Query: 103 LGLILGLLSGSLRWAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFP 162 G+ GL + ++R ELL ++++R IP LA + I WF + F++S+GVF+ Sbjct: 80 FGIAFGLAAATIRPFELLQAYLIRILRPIPPLAWVVFAIAWFKVSHAGAAFVISIGVFWI 139 Query: 163 VYLNTFHGIRSVDQGLIEMAKSYGL-SGWPLYRDVILPGALPSILVGLRFALGLVWVLLI 221 Y T +R++D E+A+S+G S W + LP P L G+R +G W+ LI Sbjct: 140 NYYATASAVRNIDPRFYELARSFGQGSYWRRAVSITLPAIAPGTLAGIRTGIGQAWMTLI 199 Query: 222 VAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARALERFWLRWHP 278 AE + G+G A + V++ +L +L+ ++D +E+ L W P Sbjct: 200 AAELLGVP-GMGQEMNAAAGVGAYEAVVIYMLAISLVYAISDLIYVLIEKRVLSWRP 255 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.139 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 548,905 Number of extensions: 19695 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 7 Length of query: 281 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 199 Effective length of database: 917,867 Effective search space: 182655533 Effective search space used: 182655533 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)