BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1523.p (327 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983332|ref|YP_001352429.1| sulfonate ABC transporter, peri... 373 e-105 gi|152983072|ref|YP_001352711.1| sulfonate ABC transporter, peri... 264 7e-72 gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport sys... 262 2e-71 gi|152981615|ref|YP_001355155.1| ABC-type nitrate/sulfonate/bica... 254 5e-69 gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bica... 144 6e-36 >gi|152983332|ref|YP_001352429.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA [Janthinobacterium sp. Marseille] Length = 326 Score = 373 bits (957), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/324 (58%), Positives = 240/324 (74%), Gaps = 3/324 (0%) Query: 3 ANKNKSIHLPRRRSLARLSAIALGALTIGLGASPVQAQETKLLRIGYQKAANTLVLLKAH 62 +N N+ L +RR+L LSA A+GAL+ GL + AQ +LRIGYQK TLV+LK Sbjct: 2 SNANEK-RLAKRRTLGYLSAAAIGALSSGL-PNFAGAQSKSVLRIGYQKYG-TLVILKGR 58 Query: 63 GALEKRLQPLGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYE 122 G LEKRL +EVKW EF AGP LLE LNVGS+DFG VGEAPP+FAQAAGAD VY E Sbjct: 59 GTLEKRLAAENIEVKWTEFPAGPVLLEGLNVGSIDFGTVGEAPPIFAQAAGADLVYVGNE 118 Query: 123 IPTPEAEALLVPKNSPIKSVAELKGKKVAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLA 182 P+P +EA++VPKNS +K+VA+LKGKKVA NKGS+VH+L+V L+KA L Y DI+ ++LA Sbjct: 119 PPSPTSEAIIVPKNSTLKTVADLKGKKVALNKGSNVHYLLVKALEKASLDYKDIETIFLA 178 Query: 183 PADARAAFERGAVDAWAIWDPFQAAAEKQVGARRLASGAGVVSHHQFFLSARPFAAKNPQ 242 PADARAAFERG+VDAW IWDPF AAAEKQ+GAR LA G G+V++HQFFL++R +A KNP+ Sbjct: 179 PADARAAFERGSVDAWVIWDPFLAAAEKQIGARVLADGTGIVANHQFFLASRSYAEKNPK 238 Query: 243 VQKILLEEITREGEWVRTHTAEAAAQLSPIQGLDADIIETGLKRYAHIYKPVDAQVLAEQ 302 + ILL+E+ + +W + AE + L GLD +E KRY++ KPV A+V+AEQ Sbjct: 239 IVSILLDELDQVDQWSSKNLAEVSKVLVAQTGLDLPSVELAAKRYSYGVKPVTAEVIAEQ 298 Query: 303 QKIADAFYELKLIPKPLKVSDAVL 326 QKIAD F LKLIPK + V DA++ Sbjct: 299 QKIADVFSNLKLIPKKITVKDALV 322 >gi|152983072|ref|YP_001352711.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA [Janthinobacterium sp. Marseille] Length = 320 Score = 264 bits (674), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 129/290 (44%), Positives = 188/290 (64%), Gaps = 1/290 (0%) Query: 38 QAQETKLLRIGYQKAANTLVLLKAHGALEKRLQPLGVEVKWAEFAAGPQLLEALNVGSVD 97 A +LR+G+QK TLV+LKA G LE++L V+V+W EF GP+LLEALN+G++D Sbjct: 30 DAYRPDVLRVGFQKYG-TLVVLKARGDLERKLANNNVKVEWFEFPTGPRLLEALNIGAID 88 Query: 98 FGYVGEAPPVFAQAAGADFVYTAYEIPTPEAEALLVPKNSPIKSVAELKGKKVAFNKGSD 157 FG G+ PP+F+QAAGA F Y YE P+P+ AL+V + S IKSV +L GKK+A +KG + Sbjct: 89 FGVTGDGPPIFSQAAGAKFFYVGYEPPSPKGIALVVKEESSIKSVKDLVGKKIAVSKGGN 148 Query: 158 VHWLVVALLKKAGLQYSDIQPVYLAPADARAAFERGAVDAWAIWDPFQAAAEKQVGARRL 217 VH L++ L+ GL+ +DI P+YLAPA+ RAAFE GAVD W +DP+ A + R + Sbjct: 149 VHVLLLRALQVNGLKPTDIVPIYLAPAEGRAAFESGAVDGWVAFDPYLANVQHSSRTRVI 208 Query: 218 ASGAGVVSHHQFFLSARPFAAKNPQVQKILLEEITREGEWVRTHTAEAAAQLSPIQGLDA 277 G G+ ++QF+ ++ K P V ++L EI E+ + + A QL+P+ G+D Sbjct: 209 QDGQGLSPNYQFYFASEALTTKRPDVVNLVLSEIKTVDEYASKNFSSVAKQLAPLIGMDE 268 Query: 278 DIIETGLKRYAHIYKPVDAQVLAEQQKIADAFYELKLIPKPLKVSDAVLK 327 ++ T L+R + PV +++ QQKIAD FYE+ LIPKP++V + K Sbjct: 269 SVVITALQRMGYGISPVTSEITQSQQKIADMFYEVGLIPKPVRVEAVIWK 318 >gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport system substrate-binding protein [Janthinobacterium sp. Marseille] Length = 317 Score = 262 bits (670), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 137/293 (46%), Positives = 191/293 (65%), Gaps = 2/293 (0%) Query: 32 LGASPVQAQET-KLLRIGYQKAANTLVLLKAHGALEKRLQPLGVEVKWAEFAAGPQLLEA 90 L A P AQ+ +RIGYQK++ + +LK G LE+RL LGV+V W EFA+G LLEA Sbjct: 20 LFALPAHAQKAGDTVRIGYQKSSTLITVLKTRGTLEQRLGALGVKVSWHEFASGLPLLEA 79 Query: 91 LNVGSVDFGY-VGEAPPVFAQAAGADFVYTAYEIPTPEAEALLVPKNSPIKSVAELKGKK 149 LNVG++D V + PVFAQAAGA Y A E P+P A+A++V +S IK++A+L+GK+ Sbjct: 80 LNVGAIDVSADVADTVPVFAQAAGAQLTYIAQESPSPSAQAIVVKADSNIKTLADLRGKR 139 Query: 150 VAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPADARAAFERGAVDAWAIWDPFQAAAE 209 V F K + H+L++A L+KAGL DIQ YLAPAD RAAFER A+DAW IWDPF AA + Sbjct: 140 VGFAKAAGAHYLLIAALEKAGLSLKDIQLAYLAPADGRAAFEREAIDAWVIWDPFLAAVQ 199 Query: 210 KQVGARRLASGAGVVSHHQFFLSARPFAAKNPQVQKILLEEITREGEWVRTHTAEAAAQL 269 +Q R L G G+ + +++LS+ PFA P V K++++ + G+WV+ +AA L Sbjct: 200 RQSQVRVLTDGRGLADYQRYYLSSTPFAKARPDVVKVIVDALQETGKWVKQSPKDAATLL 259 Query: 270 SPIQGLDADIIETGLKRYAHIYKPVDAQVLAEQQKIADAFYELKLIPKPLKVS 322 +P+ GLD +E R ++ + V + L EQQKIADAF L+PK + + Sbjct: 260 APVWGLDVPTVEQANARRSYEVRAVLPERLGEQQKIADAFLAEGLLPKKVNAT 312 >gi|152981615|ref|YP_001355155.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 321 Score = 254 bits (649), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 130/286 (45%), Positives = 182/286 (63%), Gaps = 2/286 (0%) Query: 41 ETKLLRIGYQKAANTLVLLKAHGALEKRLQPLGVEVKWAEFAAGPQLLEALNVGSVDFGY 100 E + LRIGYQK NTL +LK G LEK LQPLG +VKW EFAAGPQL EALN+ ++DFG+ Sbjct: 31 EERTLRIGYQKF-NTLNILKGTGNLEKALQPLGWKVKWFEFAAGPQLTEALNLDAIDFGH 89 Query: 101 VGEAPPVFAQAAGADFVYTAYEIPTPEAEALLVPKNSPIKSVAELKGKKVAFNKGSDVHW 160 + P FA AAG + VY A E P P+ A+ V ++SPI+S+ ELKGKK+A +G +V + Sbjct: 90 AADTPSAFANAAGVNAVYLAAEQPYPKGIAIFVAQDSPIRSIKELKGKKIALGRGWNVQY 149 Query: 161 LVVALLKKAGLQYSDIQPVYLAP-ADARAAFERGAVDAWAIWDPFQAAAEKQVGARRLAS 219 L+V L++ GL Y+DI P Y+ AD RAAF+ G VDA A+WDPF A + R L Sbjct: 150 LLVRALEEVGLTYNDIVPAYVTNAADVRAAFQSGNVDAAALWDPFLAGQQITSNPRILRD 209 Query: 220 GAGVVSHHQFFLSARPFAAKNPQVQKILLEEITREGEWVRTHTAEAAAQLSPIQGLDADI 279 G+G+ ++ F L+ F +N + +IL E+ + W + H E A L+P G+D + Sbjct: 210 GSGLSNNRTFHLANPKFVDQNKNIIRILFAELKKTNTWTQAHPQETAELLAPQLGVDVKV 269 Query: 280 IETGLKRYAHIYKPVDAQVLAEQQKIADAFYELKLIPKPLKVSDAV 325 + +R + P+DA ++ EQQ+I +AFY+L LI P++V D V Sbjct: 270 LRLATERRNYTTVPIDAGIIQEQQQIVEAFYKLNLIKNPVQVKDKV 315 >gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 332 Score = 144 bits (364), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 95/269 (35%), Positives = 145/269 (53%), Gaps = 6/269 (2%) Query: 11 LPRRRSLARLSAIALGALTIGLGASPVQAQETKLLRIGYQKAANTLVLLKAHGALEKRLQ 70 + RR + + + L L+ + S A + +R+ Y + T ++LK G LE++++ Sbjct: 1 MDRRFFIKNTALLTLAGLSTSVSLSAHAAAAPEEIRLDYAYYSPTSLVLKHFGWLEEQVK 60 Query: 71 PLGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPTPEAEA 130 G++VKW + LE L+ S+DFG V ++A G + + + Y PE A Sbjct: 61 SSGIKVKWTLSQGSNRALEYLSANSIDFGSTAGLAAVLSRANG-NPIKSVYVYSRPEWTA 119 Query: 131 LLVPKNSPIKSVAELKGKKVAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPADARAAF 190 LLVPK+SPIK+VA+LKGKK+A KG+D + ++ LK GL+ SD++ V+L AD RAA Sbjct: 120 LLVPKDSPIKTVADLKGKKIAATKGTDPYLFLLRTLKVNGLKKSDVEIVHLQHADGRAAL 179 Query: 191 ERGAVDAWAIWDPFQAAAEKQVGARRLASGAGVVSHHQFFLSARPFAAKNPQVQKILLEE 250 E G +DAWA DP A++E Q G+R L + + F FA K P+ K +L+ Sbjct: 180 ESGRIDAWAGLDPHMASSELQAGSRLLYRNVA-FNTYGFLNVTEDFAKKYPEQVKQVLQA 238 Query: 251 ITREGEWVRTHTAEAAAQLSPIQGLDADI 279 R W+ + EA S IQ +A I Sbjct: 239 YERARLWILANPREA----SQIQADEAKI 263 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 724,224 Number of extensions: 30062 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 7 Length of query: 327 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 243 Effective length of database: 910,473 Effective search space: 221244939 Effective search space used: 221244939 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)