BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1521.p
         (337 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980434|ref|YP_001352427.1| ABC-type sulfate transport syst...   502   e-143
gi|152981230|ref|YP_001354280.1| thiosulfate binding periplasmic...   265   4e-72

>gi|152980434|ref|YP_001352427.1| ABC-type sulfate transport system
           substrate-binding protein [Janthinobacterium sp.
           Marseille]
          Length = 334

 Score =  502 bits (1293), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/338 (73%), Positives = 286/338 (84%), Gaps = 6/338 (1%)

Query: 1   MLKKIIKSIAAALVLAQAAHVAQAADVSLLNVSYDPTRELYADYNKAFAKYWKDKTGDIV 60
           +LKK++ +  A  ++A + H   AA+VSLLNVSYDPTRELY ++NKAFAK WK K GD +
Sbjct: 2   LLKKLLGTAFAIALVAPSVH---AAEVSLLNVSYDPTRELYQEFNKAFAKEWKAKAGDDL 58

Query: 61  TIKASHGGSGKQGRSVIDGIDADVVTLALAYDIDEISEKAKLLPADWQKRLPHNSSPYTS 120
            +K SHGGSGKQGR+VIDG++ADVVTLALAYDID I+E   LL  DWQKRLPHNSSPYTS
Sbjct: 59  KLKTSHGGSGKQGRAVIDGLEADVVTLALAYDIDAIAEHG-LLAKDWQKRLPHNSSPYTS 117

Query: 121 TIVFLVRKGNPKGIKDWGDLIKPGISVITPNPKTSGGARWNYLAAWAYA-KQKGGSDDAA 179
           TIVFLVRKGNPKGIKDW DL+KPG++VITPNPKTSGGARWN+LAAW YA KQ GG++  A
Sbjct: 118 TIVFLVRKGNPKGIKDWNDLVKPGVAVITPNPKTSGGARWNHLAAWLYALKQPGGTEATA 177

Query: 180 RDYIAKLFKNVPVLDSGARGATITFVERGIGDVLLAWENEALISLKEWGPDKFDIVAPSI 239
            D+I+KL+KNVPVLDSGARG+T TFVERGIGDVLLAWENEA++++KE GPDK +IVAPS+
Sbjct: 178 TDFISKLYKNVPVLDSGARGSTTTFVERGIGDVLLAWENEAILAIKELGPDKVEIVAPSV 237

Query: 240 SILTEPPVAVVDKVADRRGTRKVAEEYLKYLYTEQGQEIIAKNYYRPIDPKIAAKYASQF 299
           SIL EPPVAVVDKV DRRGTRKVAE YLKYLYT +GQEI A+NYYRP D K+A KYA+QF
Sbjct: 238 SILAEPPVAVVDKVVDRRGTRKVAEAYLKYLYTTEGQEIAAQNYYRPTDEKVAKKYAAQF 297

Query: 300 PKLNLVTIDKDFGGWQKAQKTHFADGGTFDQLYTPNKK 337
           PK+ L TI  D GGW  AQK HF+DGG FDQ+Y P KK
Sbjct: 298 PKVKLYTI-ADVGGWTAAQKKHFSDGGVFDQIYQPGKK 334


>gi|152981230|ref|YP_001354280.1| thiosulfate binding periplasmic
           protein of sulfate/thiosulfate ABC transporter
           [Janthinobacterium sp. Marseille]
          Length = 336

 Score =  265 bits (676), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 196/339 (57%), Gaps = 6/339 (1%)

Query: 1   MLKKIIKSIAAALVLAQAAHVAQAADVSLLNVSYDPTRELYADYNKAFAKYWKDKTGDIV 60
           M KK++   AA   L   A  AQA +  LLN SYD  RE++A  N  F   WK +TG  +
Sbjct: 1   MFKKVVLLTAATATLLSGA--AQAQEKPLLNASYDVAREVFAAINPKFQAKWKAETGQDL 58

Query: 61  TIKASHGGSGKQGRSVIDGIDADVVTLALAYDIDEISEKAKLLPADWQKRLPHNSSPYTS 120
            I  S  G+ +Q + +I G   D VT     DID ++++  L+  DWQK  P+NSSPY S
Sbjct: 59  KIDQSFAGTSRQAQDIIQGKKVDTVTFNQVTDIDILAQRG-LVRKDWQKAFPNNSSPYYS 117

Query: 121 TIVFLVRKGNPKGIKDWGDLIKPGISVITPNPKTSGGARWNYLAAWAYAKQKGGSDDA-A 179
           TI FLVRKGNPK IK W DL++  + V+ PNPKTSG AR+ YL AW YA +K   D+A  
Sbjct: 118 TIAFLVRKGNPKNIKTWDDLVRDDVKVVFPNPKTSGNARYTYLGAWLYANEKFKGDEAQT 177

Query: 180 RDYIAKLFKNVPVLDSGARGATITFVERGIGDVLLAWENEALISLK--EWGPDKFDIVAP 237
           + ++ KL  NV    +G RGAT+ F +   GD LL +E+E +   K  E+    ++IV P
Sbjct: 178 KQFVGKLLHNVVNFPTGGRGATVAFAQNNQGDALLTFESEVINIAKSDEFKSGAYEIVVP 237

Query: 238 SISILTEPPVAVVDKVADRRGTRKVAEEYLKYLYTEQGQEIIAKNYYRPIDPKIAAKYAS 297
            +S+L E PVAVVDKV D +GTRKVA  YL Y Y+ + Q ++    YR   P +A   A 
Sbjct: 238 PVSVLAEFPVAVVDKVVDEKGTRKVATAYLNYEYSREIQLLLTTFNYRVHHPDVAKVVAD 297

Query: 298 QFPKLNLVTIDKDFGGWQKAQKTHFADGGTFDQLYTPNK 336
           ++ K+ L+   K  G W   Q  HFA G   DQL +  +
Sbjct: 298 RYAKVRLIDPTKVLGSWDDIQAKHFAGGAVLDQLLSQRR 336


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 817,626
Number of extensions: 35326
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 253
Effective length of database: 910,473
Effective search space: 230349669
Effective search space used: 230349669
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)