BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1519.p (366 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981425|ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidas... 442 e-125 gi|152980485|ref|YP_001353523.1| D-alanyl-D-alanine carboxyopept... 218 5e-58 gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine carboxypepti... 69 6e-13 >gi|152981425|ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille] Length = 436 Score = 442 bits (1138), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/298 (71%), Positives = 253/298 (84%), Gaps = 1/298 (0%) Query: 56 SLNNREKLVRKVSVVRGKRHVSYQRVSVAPAVPVVPPVMTAGDMAGLNLTPDPLALRSNV 115 SLN+ EKLV+K VVRGK+ V YQRV+ P + VVPPV+TAGD+AGLN+T D LAL SNV Sbjct: 128 SLNSNEKLVKKEVVVRGKKKVIYQRVA-KPVMTVVPPVLTAGDIAGLNMTRDSLALASNV 186 Query: 116 ALVIDQASSQVLFEKNSSVALPIASVTKLMTALVVVEAHLNMEEVLTVTDDDVDREKHSS 175 ALV+DQ++S VLFEKN++V LPIAS+TKLMT LVVVEA +M E+L VT++D+DREK+SS Sbjct: 187 ALVLDQSTSAVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEILEVTEEDIDREKNSS 246 Query: 176 SRLRVGSTLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTHYV 235 SRLRVGS LSR +MLHIALMSSENRAASALGR+YPGG+ AFVAAMNAKARSLGM THYV Sbjct: 247 SRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGIRAFVAAMNAKARSLGMNGTHYV 306 Query: 236 DSTGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHAMQYNSSNRLTSNKE 295 DSTGLSS NVASA DLAKLV+AA N+ I+RQYSTD KY+VEP G A+QY +SNRL +N + Sbjct: 307 DSTGLSSNNVASAADLAKLVIAASNHSILRQYSTDTKYVVEPGGRALQYANSNRLVNNPD 366 Query: 296 WDIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDATRMRKWLVEDQP 353 W+IG+QKTG+I+EAG CLVM I GRPIVM+FLDSKG+LS +GDA R+RKWL P Sbjct: 367 WEIGIQKTGYISEAGRCLVMQANINGRPIVMIFLDSKGKLSRLGDAARIRKWLETQHP 424 >gi|152980485|ref|YP_001353523.1| D-alanyl-D-alanine carboxyopeptidase [Janthinobacterium sp. Marseille] Length = 274 Score = 218 bits (555), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 109/247 (44%), Positives = 166/247 (67%), Gaps = 2/247 (0%) Query: 116 ALVIDQASSQVLFEKNSSVALPIASVTKLMTALVVVEAHLNMEEVLTVTDDDVDREKHSS 175 A+VID+ + QV+FEKN++ +PIAS+TKLMTA+VV++A +M E +++T+DDVD K SS Sbjct: 27 AIVIDEGTGQVVFEKNATDIVPIASLTKLMTAMVVLDAKPDMHERISITEDDVDTLKFSS 86 Query: 176 SRLRVGSTLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTHYV 235 SR+ VG+ SR ++L +ALMSS+NRAA AL R+YPGGL F A+ +KA L + T+ Sbjct: 87 SRVPVGAVFSRHELLELALMSSDNRAAHALARSYPGGLEHFKVAVRSKAHMLNLRRTNIE 146 Query: 236 DSTGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHAMQYNSSNRLTSNKE 295 + TGLS N ++A DLAKL +AA YP I + +T +++ +G QY+++NRL +K Sbjct: 147 EPTGLSPYNTSTASDLAKLALAASKYPDIERITTVSNDLIDVNGRMRQYHNTNRLVGDKN 206 Query: 296 WDIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDATRMRKWLVED--QP 353 W I L KTG+ EAG C++M GR +MV L+++G + DA + + L ++ QP Sbjct: 207 WTISLSKTGYTQEAGRCIIMRVHAAGRDAIMVLLNARGNANRTADANYLHRLLTKEHHQP 266 Query: 354 NLTRVKM 360 + ++ + Sbjct: 267 VMAKLNL 273 >gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine carboxypeptidase [Janthinobacterium sp. Marseille] Length = 382 Score = 68.6 bits (166), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 24/211 (11%) Query: 117 LVIDQASSQVLFEKNSSVALPIASVTKLMTALVVVEA----HLNMEEVLTVTDDDVDREK 172 L++D S+QVL + + AS+TKLMTA V A L++ +++T++ + + Sbjct: 34 LLLDATSNQVLASNEPDMRIEPASLTKLMTAYVAFTAIQDKKLDLNQMITISTNAWKVDP 93 Query: 173 HSSSRL---RVGSTLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGM 229 SS RV + +D+L+ ++ S N AA A+ G AFVA MN +A +GM Sbjct: 94 SSSKMFIEPRV--PVKVNDLLYGLIVQSGNDAAVAIAEAVAGTEDAFVALMNREAERMGM 151 Query: 230 MDTHYVDSTGL-SSQNVASARDLAKLVVAAYN-YP-IIRQYSTDPKYMVEPSGHAMQYNS 286 TH+ + GL S+ N ++ARDL+ L N +P + YST E + + ++ + Sbjct: 152 KSTHFANPHGLPSASNYSTARDLSVLASHLINDHPEFYKIYSTK-----EYTYNNIKQPN 206 Query: 287 SNRLTSNKEW---DIGLQKTGFINEAGHCLV 314 NRL W + KTG+ AG+CL+ Sbjct: 207 RNRLL----WLDPTVDGMKTGYTQGAGYCLI 233 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.128 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 666,268 Number of extensions: 22188 Number of successful extensions: 71 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 67 Number of HSP's successfully gapped: 3 Length of query: 366 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 281 Effective length of database: 906,776 Effective search space: 254804056 Effective search space used: 254804056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)