BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1517.p
         (268 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980544|ref|YP_001353249.1| XRE family transcriptional regu...   153   1e-38

>gi|152980544|ref|YP_001353249.1| XRE family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 266

 Score =  153 bits (386), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/242 (38%), Positives = 134/242 (55%), Gaps = 16/242 (6%)

Query: 6   ARRALGDFLKSQREQTAPAQAGLPHLAYGRRRTPGLRREEVAQLCGISVTWYTWIEQGRT 65
            R  L +FL   R++  P   GLP  A  RRRTPGLRREEVA L G+ +TWYTW EQGR 
Sbjct: 13  TRNELSEFLTRHRKKLTPGDVGLP--ATERRRTPGLRREEVAALAGVGLTWYTWFEQGRE 70

Query: 66  DSVSPQALARIADALHLPRAKRVYLFELAGKKDPVLPEQQAATMIAPEILEVVGNFRAPA 125
             VS + L  +A AL L  A+  +LF LA ++ P L   Q  ++ A  I +++ +   PA
Sbjct: 71  VKVSEKFLLSVAHALKLDDAECCHLFLLAHRRPPPLEAHQWMSVTAG-IQKLLDDLPRPA 129

Query: 126 YLLDRYWNAVTWNAAARKLFMGWLDGKAGQP-NLLRFMFGSAAAQSLTVDWEQRARRLVA 184
           Y+ +  W+ V WNAAA  LF   L+GK  +  N+LR  F +   +     W+  ARRL+ 
Sbjct: 130 YVQNLRWDVVAWNAAADALFE--LEGKQREDRNILRMTFANPEMRRRLPGWDDDARRLLT 187

Query: 185 EFRADSASLLDDPELQALVQELSAASPFFQRAWH----------LQDVVEREGGERRFRH 234
           +FR D A   +DP + AL++++   SP F+R W           ++ VV+  G +R F H
Sbjct: 188 QFRYDVAIAPEDPVMLALIEDMKMLSPHFRREWETPGNEVAQRGIRSVVDAGGQQRNFEH 247

Query: 235 PL 236
            +
Sbjct: 248 EI 249


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 620,703
Number of extensions: 23997
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 186
Effective length of database: 917,867
Effective search space: 170723262
Effective search space used: 170723262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)