BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1516.p
         (299 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982598|ref|YP_001352420.1| transporter of the DMT superfam...   410   e-116

>gi|152982598|ref|YP_001352420.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 294

 Score =  410 bits (1054), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/291 (75%), Positives = 248/291 (85%), Gaps = 1/291 (0%)

Query: 9   SRSRQFLMRLVPLLFVLIWSTGFIVAKFGLPYAPPLTFLLLRFTGVLLVLLPLVLLFRAP 68
           SRS  +L  + P  FVLIWSTGFIVAKFGLPYAPPLTFL LRF GVL++LLPLVLL RAP
Sbjct: 5   SRSSPWLAAM-PFFFVLIWSTGFIVAKFGLPYAPPLTFLALRFIGVLIILLPLVLLLRAP 63

Query: 69  WPHGRIRHVALAGVLLQAGYLAGVWCAIKIGMPAGLSALIVGLQPILTAFAAPLLGESVR 128
           WP G +RH+A+AG+L+QAGYLAGVWCAIK+GMPAGLSALIVG+QP+LTAFAAPL+GE VR
Sbjct: 64  WPVGTMRHIAVAGILVQAGYLAGVWCAIKLGMPAGLSALIVGMQPVLTAFAAPLIGERVR 123

Query: 129 GRQWVGLALGLCGVGLVVANKISLIGLSTASIALCVFALLCITAGTLYQKRYCAHFDLRT 188
            RQW+GL  GLCGV LVVANKI++IGL+  SIALCV ALL IT GT+YQK YC HFDLRT
Sbjct: 124 PRQWIGLIFGLCGVALVVANKITVIGLTWESIALCVMALLSITIGTMYQKLYCPHFDLRT 183

Query: 189 GTVIQFMASIVVVLPFAVALEGFDWHVSNVHWTPQFIGALLWSVLALSIGAIFLLFALIR 248
           GT+IQF AS  VV+PFA+  E F   + +V WTP FIGALLWSV+ALSIGAIFLLFALIR
Sbjct: 184 GTIIQFAASCAVVVPFAIYFEDFSPALQSVQWTPSFIGALLWSVVALSIGAIFLLFALIR 243

Query: 249 RSAATSVTSLLYLTPPTTAVMAWLIFGEAFSLIGALGMLLGVIGVAFVVRK 299
           +SAAT VTSLLYLTPPTTA+MAW  FGE FSLIG  GMLL VIGVAFVV+K
Sbjct: 244 KSAATQVTSLLYLTPPTTALMAWAAFGEVFSLIGIAGMLLAVIGVAFVVKK 294


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.332    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 613,279
Number of extensions: 22578
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 3
Length of query: 299
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 216
Effective length of database: 914,170
Effective search space: 197460720
Effective search space used: 197460720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 129 (54.3 bits)