BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1515.p (303 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981239|ref|YP_001352533.1| acetoin utilization protein [Ja... 73 2e-14 gi|152981105|ref|YP_001354549.1| histone deacetylase superfamily... 63 3e-11 >gi|152981239|ref|YP_001352533.1| acetoin utilization protein [Janthinobacterium sp. Marseille] Length = 434 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 14/152 (9%) Query: 116 HHAY-ADHGA-GFCVFNDAAIAARLMQAERRAARVAIVDLDVHQGNGSAAILARDDSVFT 173 HH+Y HG+ GFC N AI ++ + ++AIVD D H G+GS I D + Sbjct: 108 HHSYRVVHGSRGFCTLNMEAIMVEYIRHKYGVKKIAIVDTDCHHGDGSQDIFWHDPNTLF 167 Query: 174 LSLH--GQNNYP---FDKE-------QSDLDLALPDGVGDDDYLHALRGALQQLQQRFAP 221 +S+H G+ YP F E + ++L +P ++ +L+ L + + F P Sbjct: 168 ISMHQDGRTLYPGSGFADELGGPNAFGTTINLPMPPDTCEEGFLYVLDEIVMPILDEFKP 227 Query: 222 QLLIYLAGADPHEGDRLGKMKLTLAGLAARDE 253 L+I AG D H D + MK T G A ++ Sbjct: 228 DLIINSAGQDNHYSDPITNMKFTAHGYAVLNQ 259 >gi|152981105|ref|YP_001354549.1| histone deacetylase superfamily protein [Janthinobacterium sp. Marseille] Length = 322 Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 79/313 (25%), Positives = 123/313 (39%), Gaps = 31/313 (9%) Query: 1 VKVFYSDHFVLPLPPGHRFPMVKYRMIREGAIQAVPDLELYEAQPASDG---ELALAHHP 57 V Y+ L PG P R+ VP+ + E + A G ++ L H Sbjct: 14 TTVIYTHDACLEHKPGPSHPESPERLKAVLRALRVPEFDAVEWRDAPMGTREQVLLIHTE 73 Query: 58 DYIARVS-----QGLLSPAEQREIGFPWTSQMVERSRRSAGATIAACRAAFEQGVAVNLA 112 D++ V +G + + P + + V R +A A + V Sbjct: 74 DFVTDVEDASPHRGYMPLDGGDTVMSPGSLEAVMRCVGAACAGVDLVLDNEAHNVFCATR 133 Query: 113 GGTHHAYADHGAGFCVFNDAAIAARLMQAERRAARVAIVDLDVHQGNGSAAILARDDSVF 172 HHA GFC++N AAIAA + RVA++D DVH GNG+ A +F Sbjct: 134 PCGHHAEPSRAMGFCIYNQAAIAAAYAYEVHKLERVAVIDFDVHHGNGTQAAFYDRPELF 193 Query: 173 TLSLHGQNNYP---FDKE----QSDLDLALPDGVGDDDYLHALRGALQQLQQRFAPQLLI 225 S H + YP +KE + +++ LP G + + + F P+L+I Sbjct: 194 YASSHQSHFYPGTGLEKETGVSHNIVNVPLPRGCDSALFREQTAAKMLPAIRAFNPELII 253 Query: 226 YLAGADPHEGDRLGKMKL--------TLAGLAARDETVFNYAHEHKIPVAVTMAGGYGRD 277 AG D H D L + L T + DET E +I + GGY + Sbjct: 254 ISAGFDAHHLDPLAGLNLQDDDYDWVTRELMKIADETC-----EGRI--VSILEGGYSLE 306 Query: 278 -IEQTVAVHLQTI 289 + + AVH++ + Sbjct: 307 GLASSTAVHVKAL 319 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 739,777 Number of extensions: 30556 Number of successful extensions: 86 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 2 Length of query: 303 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 220 Effective length of database: 914,170 Effective search space: 201117400 Effective search space used: 201117400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)