BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1514.p
         (187 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982302|ref|YP_001352419.1| hypothetical protein mma_0729 [...   224   2e-60

>gi|152982302|ref|YP_001352419.1| hypothetical protein mma_0729
           [Janthinobacterium sp. Marseille]
          Length = 188

 Score =  224 bits (572), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/187 (62%), Positives = 141/187 (75%)

Query: 1   MTTYTEQFSAAAKANAEAQLALFSQLAAKTFEGVEKLVDLNLKAAKSSLEESQAAAQKLF 60
           M T  EQFSAA K   E+QLA+ + L +  F+ V+K+VDLNL AAKSSL+ES AAAQKL 
Sbjct: 1   MFTIPEQFSAATKHQFESQLAILNSLTSTAFDSVQKIVDLNLNAAKSSLQESSAAAQKLA 60

Query: 61  AAKDPQEFFTLTSSHAQPTLEKSVAYGRHLSGIFSSTQAELTKAAEAQIAEVNRKVVAMI 120
            AKDPQEFF+L+++HAQP  EK++AYGRHL+ I SSTQAE TKAAE QIAE NRKV+++I
Sbjct: 61  TAKDPQEFFSLSAAHAQPNAEKALAYGRHLASIASSTQAEFTKAAETQIAETNRKVLSLI 120

Query: 121 DEAAKNAPAGSEQAISILKSTIGNLSAGYEQFTKNAKQAAEVLEANVTNAVEQISQAGAK 180
           DE +KNAPAGSE AISILKS IGN +AGYEQ +K  KQA E LE N+  A  Q   A  K
Sbjct: 121 DELSKNAPAGSENAISILKSAIGNANAGYEQLSKTTKQAVEALEGNLNAAANQFVSAAEK 180

Query: 181 VSRAAKK 187
            +  ++K
Sbjct: 181 TTTRSRK 187


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.306    0.117    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 295,006
Number of extensions: 8878
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 109
Effective length of database: 932,655
Effective search space: 101659395
Effective search space used: 101659395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 127 (53.5 bits)