BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1513.p
         (268 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981310|ref|YP_001352416.1| molybdopterin binding protein [...   384   e-108

>gi|152981310|ref|YP_001352416.1| molybdopterin binding protein
           [Janthinobacterium sp. Marseille]
          Length = 266

 Score =  384 bits (985), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/263 (70%), Positives = 212/263 (80%), Gaps = 1/263 (0%)

Query: 1   MAFGLIIIGDEILSGRRIDKHFPKVLELLSQRGLQLSWAEYIGDERERITATLKRTLASG 60
           MAFGLIIIGDEILSG+R DKHFPKV+ELL+ RGL LSWAE +GD+R RITATLKRT A  
Sbjct: 1   MAFGLIIIGDEILSGKRSDKHFPKVVELLAARGLSLSWAEVVGDDRARITATLKRTFAGN 60

Query: 61  DVVFCTGGIGATPDDHTRQCAAAALGVPLALHPEAKEKIQERIADMAREAGATPDFETAD 120
           D+VF  GGIGATPDDHTRQCAAAALGVP+ LHPEAK+KIQER+ +MA+EA    D    +
Sbjct: 61  DIVFSCGGIGATPDDHTRQCAAAALGVPIELHPEAKQKIQERMLEMAQEANVPFDLNKPE 120

Query: 121 NLHRLKMGEFPQGASIIPNPYNKIPGFWVRNTSGEGAHYFAPGFPVMAWPMFEWVLETHY 180
           NLHRLKMGEFPQGA IIPNPYNKIPGF +R+ +G GAHYF PGFPVMAWPM EW+L+THY
Sbjct: 121 NLHRLKMGEFPQGAEIIPNPYNKIPGFAIRHGNG-GAHYFMPGFPVMAWPMIEWILDTHY 179

Query: 181 ADQFHRQAWAERSLLVFEAMESTLTPLMEAIEAQFPLVKVFSLPHVGDAQTRRHIDLGVK 240
              FH+ A  E+S+LVF++MES LTPLME IE +FP VKVFSLP VGD  TRRHI+LGVK
Sbjct: 180 PHLFHQFAHFEKSVLVFQSMESALTPLMEEIENEFPQVKVFSLPSVGDENTRRHIELGVK 239

Query: 241 GDPAQVEAAFARMQEGLRTLRAE 263
           GD  Q   AF ++   L  L+ E
Sbjct: 240 GDAEQGALAFDKLLAELNQLKVE 262


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 684,094
Number of extensions: 29776
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 186
Effective length of database: 917,867
Effective search space: 170723262
Effective search space used: 170723262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)