BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1512.p
         (281 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982348|ref|YP_001352415.1| hypothetical protein mma_0725 [...   333   8e-93

>gi|152982348|ref|YP_001352415.1| hypothetical protein mma_0725
           [Janthinobacterium sp. Marseille]
          Length = 306

 Score =  333 bits (854), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 165/262 (62%), Positives = 203/262 (77%)

Query: 1   MRLFLASFGRALLAQLHIRMLWLTVLPFVVSLALWAVCLWLGLQPIIDWLQAYFVANSMF 60
           MR  L+SFGRALL+QLH RML L+V+PFV+S+ +W + LWL LQ +IDWLQ YFV N  F
Sbjct: 1   MRQVLSSFGRALLSQLHFRMLMLSVIPFVLSIIVWGLGLWLYLQTMIDWLQNYFVENDGF 60

Query: 61  GEIGSMLAWFGMSALKTVLVPLLAMWTLLPLMILTALVFVGLFTIPAIARHIGARHYPML 120
                +L W G+ ALKTV+VPL+AMW LLPLMILTAL+FVG+  +PAI +H+G+R Y  L
Sbjct: 61  RVTNELLMWLGLGALKTVVVPLIAMWILLPLMILTALIFVGVMAMPAIVKHVGSRRYKDL 120

Query: 121 EKRHGGSVAGSLWTSLWCFAVFTILWLATIWVFLIPPLAFVLHSLLWGWLTYRVMAYDTL 180
           E R GG+  GSLW S   F +F +LWL T+ + LIPPL FV+  +LWGWLTYRVMAYD L
Sbjct: 121 EARKGGTFFGSLWMSTSSFTIFLVLWLITLPLSLIPPLTFVIQPVLWGWLTYRVMAYDAL 180

Query: 181 ADYASAEERRVVLHLHRWPLLLVGTIAGALGAAPTLLWLGGVLSVILLPALAAVAIWLYV 240
           AD+A  EER+++L +HRW LLL+G I GA+GAAPTLLWLGG LSVI  P LAA AIWLYV
Sbjct: 181 ADHADPEERKIILRIHRWQLLLIGAITGAMGAAPTLLWLGGALSVIFFPVLAAGAIWLYV 240

Query: 241 LVFVFTALWFQFYCLEALLRYR 262
           LVF+F+ LWFQ YC++AL +YR
Sbjct: 241 LVFIFSGLWFQHYCMDALTQYR 262


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.332    0.144    0.495 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 728,361
Number of extensions: 29582
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 199
Effective length of database: 917,867
Effective search space: 182655533
Effective search space used: 182655533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 129 (54.3 bits)