BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1508.p
         (118 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981552|ref|YP_001352414.1| peptidyl-prolyl cis-trans isome...   196   2e-52

>gi|152981552|ref|YP_001352414.1| peptidyl-prolyl cis-trans
           isomerase [Janthinobacterium sp. Marseille]
          Length = 118

 Score =  196 bits (499), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 105/118 (88%)

Query: 1   MSITTTASGLQYEEINIGAGDEAKAGSHVTVHYTGWLQNTDGTAGSKFDSSKDRNDPFAF 60
           M+ T+T+SGLQYE+  +G G EA AG+HVTVHYTGWLQN DG+AG+KFDSSKDR DPF F
Sbjct: 1   MATTSTSSGLQYEDKVVGDGAEATAGAHVTVHYTGWLQNDDGSAGAKFDSSKDRGDPFQF 60

Query: 61  PLGAGHVIKGWDEGVQGMKVGGIRKLIIPAGLGYGARGAGGVIPPNATLIFEVELLAV 118
           PLGAGHVIKGWDEGVQGMK+GG R LIIP+ LGYGARGAGGVIPP+ATLIFEVELL V
Sbjct: 61  PLGAGHVIKGWDEGVQGMKIGGTRTLIIPSSLGYGARGAGGVIPPHATLIFEVELLGV 118


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 271,032
Number of extensions: 10569
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 46
Effective length of database: 954,837
Effective search space: 43922502
Effective search space used: 43922502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)