BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1505.p
         (469 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981421|ref|YP_001352410.1| arsenite transport protein arsB...   654   0.0  

>gi|152981421|ref|YP_001352410.1| arsenite transport protein arsB
           [Janthinobacterium sp. Marseille]
          Length = 477

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/464 (68%), Positives = 379/464 (81%), Gaps = 12/464 (2%)

Query: 8   PALCAFFALLPLPGWSAELDGASLSLAWALPFAGVLLSIAVLPLLAPALWHHHFGKIAAA 67
           PALC           +AEL+G  LS+ W +PFAG+LLSIA+ PLL P  WHHHFGK+  A
Sbjct: 23  PALCG----------AAELNGGGLSILWGIPFAGLLLSIALCPLLTPGFWHHHFGKLTLA 72

Query: 68  WGLALLLPLVSVYGSHAALAISVHALVAEYLPFIILLSALFTVAGGICVRGNLHGTPALN 127
           W LA LLP    +G+  A+  +VHA VAE+LPF+IL+++LF VAGGICVRGNLHGTPALN
Sbjct: 73  WSLAFLLPCAYFFGASTAVHGAVHAFVAEFLPFLILITSLFVVAGGICVRGNLHGTPALN 132

Query: 128 TGLLALGTLLASVMGTTGAAMLLIRPLIRANDDRKHTVHVVVFFIFLVANAGGSLTPLGD 187
           TGLLA+GT+LAS MGTTGAAMLLIRPLIRAND+RKH  H+VVFFIFLVANAGG+LTPLGD
Sbjct: 133 TGLLAIGTVLASFMGTTGAAMLLIRPLIRANDNRKHGAHIVVFFIFLVANAGGALTPLGD 192

Query: 188 PPLFLGFLKGVDFFWTARHLLGPMLFLCIALLSIFYLLDRHFYLNREERR--AFDPTPDS 245
           PPLFLGFLKGVDFFWT RHL  P LF+C+ALL IFY+LD H+Y  REE +    DPTPDS
Sbjct: 193 PPLFLGFLKGVDFFWTVRHLFAPTLFICVALLIIFYVLDSHYYHKREEVKPPELDPTPDS 252

Query: 246 SLQLEGKLNFLLLLAVVALVLMSGLWKPGVAIELMGVPLQWQNLLRDGALLVVIVLSLWL 305
           +++ EGK+NF+LL  +VA+VLMSG WKPG++   +G  ++ QNLLRD AL+ V+ LSL +
Sbjct: 253 AIRFEGKINFVLLGIIVAMVLMSGFWKPGISYVFVGNTIELQNLLRDVALIAVVFLSLAV 312

Query: 306 TPSSARQGNEFGWGPMLEVGKLFAAIFLTIAPVIAMLRAGEQGAFAAVVKAVSGPDGRPD 365
           TP +AR GNEF WGP+ EVGKLFA IF+TI PVIAMLRAGE GAF+A+V+AV+  +G+P 
Sbjct: 313 TPKTARSGNEFSWGPIQEVGKLFAGIFITIIPVIAMLRAGESGAFSAIVRAVTDGNGQPI 372

Query: 366 DVMYFWMTGLLSSFLDNAPTYLVFFNTASGDARELMGPLASTLAAISAGAVFMGANSYIG 425
           + MYFW TGLLSSFLDNAPTYLVFFNTA GDA  LM  LA TLAAIS GAVFMGANSYIG
Sbjct: 373 NAMYFWATGLLSSFLDNAPTYLVFFNTAGGDAATLMTTLAGTLAAISCGAVFMGANSYIG 432

Query: 426 NAPNMMVKAIAEERGVRMPSFFGYLAWSAGILVPLFIVMSLLFF 469
           NAPNMMVKAIAEERG++MPSFFGY+AWS  IL+PLF++M+ +FF
Sbjct: 433 NAPNMMVKAIAEERGIKMPSFFGYMAWSCAILIPLFVLMTFIFF 476


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 930,788
Number of extensions: 33877
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 382
Effective length of database: 899,382
Effective search space: 343563924
Effective search space used: 343563924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)