BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1504.p
         (391 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980350|ref|YP_001351717.1| nicotinate phosphoribosyltransf...   412   e-116

>gi|152980350|ref|YP_001351717.1| nicotinate
           phosphoribosyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 414

 Score =  412 bits (1058), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/393 (52%), Positives = 261/393 (66%), Gaps = 10/393 (2%)

Query: 2   IITSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNE-NIDLTPYVDEIRAEIAALCRLR 60
           I+ SLL+ DLYKFTM Q +LH  PGAQ EY F CRN     L+    ++  E+  LC L 
Sbjct: 21  IVRSLLENDLYKFTMWQALLHSHPGAQAEYAFVCRNTPGYPLSELKADVERELDHLCTLF 80

Query: 61  FKEDELNYLRSLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEI-EISVKGPWLHTIMF 119
           F EDEL YLRSLRF+KSDFVDFL +F    K+I+V  D    G+I  I   GP +H + F
Sbjct: 81  FAEDELAYLRSLRFMKSDFVDFLTVFRFQRKFISVSTD----GDILNIHAAGPQVHVMGF 136

Query: 120 EVPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITDDPELAGCK----IADYGTRRRF 175
           E+ VL IVNE+YF    +   L EGR RL+ K++++ +    AG K      D+G RRRF
Sbjct: 137 EIFVLYIVNELYFHRFDQQAALAEGRKRLQAKIAMLKEFGSEAGRKNPFEFFDFGVRRRF 196

Query: 176 SRSWHAEVIDEMKQHMGSHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPRLRDSQT 235
           S +W  EV+  + + +  +F G+SNV  A ++ LTP+GTMAHEYLQA Q+ G RLRD Q 
Sbjct: 197 SAAWQEEVVVALAREVPQYFKGSSNVYLAKKYGLTPIGTMAHEYLQAYQSFGVRLRDFQK 256

Query: 236 FAFEMWAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGERLIQHY 295
            A E W +EYRGDLGI L+DV GMDAFL D+D+YF KLFDG RHDSGDP EWGE+ + HY
Sbjct: 257 AALEDWVQEYRGDLGIALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPVEWGEKALAHY 316

Query: 296 RDNRVDPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMV 355
              RVD ++K LVFSD+LD     ALY  F DR    FG+GTNL+ND G   L +VMK++
Sbjct: 317 AKLRVDATTKRLVFSDALDLPTAFALYRHFADRVMTGFGIGTNLSNDTGIATLNIVMKLM 376

Query: 356 RCNGQPVAKLSDTPSKNMCDDPAYVNYLRQVFQ 388
            CNGQPVAKLSD+  K +C D  ++ YLRQVF 
Sbjct: 377 SCNGQPVAKLSDSAGKTLCTDETFLAYLRQVFH 409


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 898,668
Number of extensions: 36687
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 306
Effective length of database: 906,776
Effective search space: 277473456
Effective search space used: 277473456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)