BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1503.p (414 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino a... 109 3e-25 gi|152981476|ref|YP_001354873.1| ABC-type branched-chain amino a... 90 3e-19 gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-bin... 69 5e-13 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 67 2e-12 gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino a... 55 5e-09 >gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 431 Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 103/374 (27%), Positives = 179/374 (47%), Gaps = 21/374 (5%) Query: 24 VASLALPLPAGAA-EAIRIGEINSQGRQS-TSGQAYRNGLALALEQINEAGGINGRPLQL 81 VA+ L +PA A + +R+G I +G + T G+ G+ +IN AGGI GR ++L Sbjct: 26 VATGLLGMPAFAQNKPLRVGIIAPRGGVAGTIGECGLRGVEWTTARINAAGGIGGRKVEL 85 Query: 82 VVREDDGDADQAARNAKELVSNEHVEVLTGTMLSDVALAVARQAARSKTVLVVGDALS-D 140 V++E+ D R ++LV E V+ + G + S V+LA+A A S+ + D + D Sbjct: 86 VIQEETSPKDTIDR-FRKLVLQEKVDCVQGIVSSGVSLALAPAAEDSRMPTIFWDGTTQD 144 Query: 141 AI--TLDKGNRYTFRVRPSTY--MQAAMLAEQAARMPGRRWAVVAPNYEYGQSAVASFKM 196 + T+ K +Y FR + + A++LA + + +R A V P+Y YG++ +F+ Sbjct: 145 GVKETMPK-PKYVFRSTDNECEAVMASLLAIKHFKGKFKRIACVNPDYSYGRNTWTAFQA 203 Query: 197 LLKQARPDVEFVSDQWPALGKIKADDVVRAIRQSRPDGIFNATFGEDLQKLVQAGHRQQL 256 LLK+ + E VS+QW +G + V A++ ++PD IF++ DL ++ H L Sbjct: 204 LLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPDLIFSSLLFADLPVFMKQAHNAGL 263 Query: 257 FNGVRVVSMGAVGTQALDPSQSEAIRDWVSIGYPGEQINTPE----HQRFLDAYMKKFSE 312 G R V + A G Q + E + + G+ + P+ + F+ Y K+ + Sbjct: 264 TEGTRFV-LPAAGWQHT-AMKKEFTPEGIVWGHNTMYFDDPKASATQKEFVKWYADKYKD 321 Query: 313 PPQLPVVVGYSTMLAIAGGLRKSEGGDG-----EALVEALRGLHWSSPLGELSFRALDQQ 367 P Y +M+ G+ K+ E + A+ G+ S G+ + RA D Sbjct: 322 YPHWEADRAYFSMMVYKAGVEKALAAKKSWPTPEEICAAIPGVQIESLGGKGAMRA-DHI 380 Query: 368 STMGAFIGLVSQKD 381 + GL + K+ Sbjct: 381 ANQTFHQGLSTNKN 394 >gi|152981476|ref|YP_001354873.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 423 Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 102/432 (23%), Positives = 192/432 (44%), Gaps = 43/432 (9%) Query: 10 LRFSL-SLLPALLGLVASLALPLPAGAAEAIRIGEINSQ-GRQSTSGQAYRNGLALALEQ 67 ++F + ++L +L V S+A AAE IRIG I+ G + +G+A L LA++ Sbjct: 1 MKFQVKNILATVLLCVCSVA-----QAAEPIRIGMIDGMSGAFANAGEAVVRNLQLAIDA 55 Query: 68 INEAGGIN----GRPLQLVVREDDGDADQAARNAKELVSNEHVEVLTGTMLSDVALAVA- 122 +N GG+ PL L + ++ +++ K L ++ G + A + Sbjct: 56 VNARGGVRLPDGAHPLALEIFDNKSGVEESLLEFKRLADQRIPFMVQGNSSAVAAALLDA 115 Query: 123 -----RQAARSKTVLVVGDALSDAITLDKGNRYTFRVRPSTYMQAAMLAEQAAR-MPGRR 176 ++A+ ++ + + A+ A+T +K + + FR + M+ L E R +R Sbjct: 116 VNKHNQRASDNRVLFLNYSAVDPALTNEKCSYWHFRFDANADMRMHALTEVIKRDARAKR 175 Query: 177 WAVVAPNYEYGQSAVASFKMLLKQARPDVEFVSDQWPALGKIK-ADDVVRAIRQSRPDGI 235 ++ +Y +G+ + + L RPD++ V D+ +GKIK + I+ S D + Sbjct: 176 VYLIGQDYSFGRLVAQAARTQLAAKRPDIQIVGDELHPIGKIKDFAPYIAKIKASGADAV 235 Query: 236 FNATFGEDLQKLVQAGHRQQL------FNGVRVVSMGAVGTQALDPSQSEAIRDWVSIGY 289 + +G DL LV+A L F G + + A+G +D + A+ +W + Sbjct: 236 ISGNWGNDLTLLVKAAKEFGLNTKFYTFYGNGLGAPAAIGDAGVD--RVRAVAEW----H 289 Query: 290 P--GEQINTPEHQRFLDAYMKKFSEPPQLPVVVGYSTML-AIAGGLRKSEGGDGEALVEA 346 P G+ + RF A+ +++ +P V + M+ +A + K+ D A+ +A Sbjct: 290 PNVGDGMADSASGRFYSAFRQRYPQPKDDYVHLRMHIMIEMLATAIEKARSTDARAVAQA 349 Query: 347 LRGLHWSSPLGELSFRALDQQSTMGAFIGLVSQK-DGRSSLRE---WHYLDGTAYLPP-- 400 L G H+ + + + RA D Q ++ ++ +K DG + YLP Sbjct: 350 LEGAHYRNAFHDATMRASDHQLIQPLYVSVMRRKSDGGMRFDNEGSGYGFKTELYLPAAS 409 Query: 401 ---PTYVRSRRP 409 PT R +RP Sbjct: 410 TALPTSCRLQRP 421 >gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-binding precursor signal peptide protein [Janthinobacterium sp. Marseille] Length = 410 Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 160/374 (42%), Gaps = 28/374 (7%) Query: 17 LPALLGLVASLALPLPAGAAEAIRIGEINS-QGRQSTSGQAYRNGLALALEQINEAGGIN 75 +P+L+ L A+ AL AE +RI I+ G + GQ + E N+ Sbjct: 5 IPSLI-LSAAFALSASHSFAENVRIAFIDPLSGPFAPVGQNLLHSFQTIAELSNQKQWGG 63 Query: 76 GRPLQLVVREDDGDADQAARNAKELVSNEHVEVLTGTMLSDVALA----VARQAARS--K 129 +++V ++ G ++ K + + + G S VALA + + R+ K Sbjct: 64 SNTVEIVGFDNKGSPQESLIQLKSAIDQGYRYITQGNG-SGVALALIDAINKHNERNPGK 122 Query: 130 TVLVVGDALSD-AITLDKGNRYTFRVRPSTYMQAAMLAEQAARMPG-RRWAVVAPNYEYG 187 VL + + D A+T K + + FR ++ M+ L A+ P ++ V+ NY G Sbjct: 123 EVLFLNHSAGDPALTNSKCSFWHFRFDANSEMKMESLTTFMAKDPNIKKIYVIGQNYALG 182 Query: 188 QSAVASFKMLLKQARPDVEFVSDQWPALGKIK-ADDVVRAIRQSRPDGIFNATFGEDLQK 246 Q S + + + RPDV+ V D +G++K V ++ S D I A +G DL Sbjct: 183 QEISRSTRAYMGRKRPDVQIVGDDLHPIGQVKDFSPYVAKMKASGADTIITANWGADLAL 242 Query: 247 LVQAGHRQQL---FNGVRVVSMG---AVGTQALDPSQSEAIRDWVSIGYPGEQINTPEHQ 300 LV+A L F + + G A+G LD + A + + Y G++I Sbjct: 243 LVKAARDADLKANFYTLYAATTGVPTAMGAAGLDRVKYVAYWNLNNETYAGKEI------ 296 Query: 301 RFLDAYMKKFSEPPQLPVVVGYSTMLAIAGGLRKSEGGDGEALVEALRGLHWSSPLGELS 360 ++ + KK+++ + Y+ + + +++ D + A+ G+ S GE+ Sbjct: 297 --IEGFKKKYND--DYYAMASYTVLAMLGKAFKEAGSTDPLKVALAMEGMKVKSLNGEVE 352 Query: 361 FRALDQQSTMGAFI 374 R D Q+ +I Sbjct: 353 MRKSDHQAQQPLYI 366 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 10/253 (3%) Query: 17 LPALLGLVASLALPLPAGAAEAIRIGEINS-QGRQSTSGQAYRNGLALALEQINEAGGIN 75 L A +GL ++ A A E I+IG G + +G NG +A + +N+ GG+ Sbjct: 9 LAACIGL--AMFAATSAYAQETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNGGVL 66 Query: 76 GRPLQLVVREDDGDADQAARNAKELVSNEHVEVLTGTMLSDVALAVARQAARSKTVLVVG 135 G+ +QLV+ ++ + +A + ++L+ + V VL G S LA+ + + LVV Sbjct: 67 GKKIQLVIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEVPLVVE 126 Query: 136 DALSDAITLDKGNRYTFRVRPSTYMQAAMLAEQA-ARMPGRRWA-VVAPNYEYGQSAVAS 193 A S IT GN + FR P++ M+A ++ P + A + N ++G A Sbjct: 127 AASSSKIT-TAGNPWVFRTSPTSAMEAQAFSKVIDGYNPAIKKADFLVVNNDWGLGAAVE 185 Query: 194 FKMLLKQARPDVEFVSDQWPALGKIKADDVVRAIRQSRPDGIFNATFGEDLQKLVQAGHR 253 FK +L+ + P + + A + A++ S D +F + E L ++ Sbjct: 186 FKKMLEAKGIAIGRTETMTPDMTDLSAQ--LAALKGSGSDTVFVTSGIEQLTLAIRQAGE 243 Query: 254 QQLFNGVRVVSMG 266 Q+L R+++ G Sbjct: 244 QRLPQ--RIITTG 254 >gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 376 Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 89/379 (23%), Positives = 164/379 (43%), Gaps = 30/379 (7%) Query: 23 LVASLALPLPAGAAEAIRIGEINS-QGRQSTSGQAYRNGLALALEQINE----AGGINGR 77 L+AS + + A + ++IG G Q+ G+ +NG LA++++NE GG R Sbjct: 11 LIASASTLVQAQEVQTVKIGLAAPLTGPQAFYGKDSQNGARLAVDELNEKKIVVGGKQLR 70 Query: 78 PLQLVVREDDGDADQAARNAKELVSNEHVEVLTGTMLSDVALAVARQAARSKTVLVVGDA 137 +L+ +D D Q A A+ + HV + G S A+ AR + + A Sbjct: 71 -FELLSEDDAADPKQGAAVAQRFC-DLHVNAVIGHTNSGTAIPAARIYHQCGLPNLSPSA 128 Query: 138 LSDAITLDKGNRYTFRV--RPSTYMQAAMLAEQAARMPGRRWAVVAPNYEYGQSAVASFK 195 S +T N TFR+ ST QA + A + + AVV YGQ +F+ Sbjct: 129 TSPELTKSAYNT-TFRMLANDSTLAQA-LAAYTVNVLKLKTIAVVDDRSAYGQGLADAFR 186 Query: 196 MLLKQARPDVEFVSDQWPALGKIKADDVVRAIRQSRPDGIFNATFGED------LQKLVQ 249 L+ V+ V+ Q+ + ++ AI+ PD +F G D L+++ Q Sbjct: 187 TALRNT--PVQVVTQQYTNDKAVDFSAILTAIKGRNPDAVFFG--GMDPQGSAMLRQMEQ 242 Query: 250 AGHRQQLFNGVRVVSMGAVGTQALDP-SQSEAIRDWVSIGYPGEQIN-TPEHQRFLDAYM 307 G +Q F G + TQ ++ ++ I+D + + G ++ T + + Y Sbjct: 243 LGLTRQKFIG-----GDGICTQGMEQRTEGMKIQDNLVCAHSGIALDRTTASRAWKKRYD 297 Query: 308 KKFSEPPQLPVVVGYSTMLAIAGGLRKSEGGDGEALVEALRGLHWSSPLGELSFRALDQQ 367 +KF Q+ Y +LA+A ++ + + + + A+ +H++ + + F A + Sbjct: 298 EKFPGQFQMHGPYSYDAVLAVAKAMQAANSVEPQKYLPAMGKVHFAGVMSNVQFDA--RG 355 Query: 368 STMGAFIGLVSQKDGRSSL 386 I + + +DG+ L Sbjct: 356 EIKNPTISIYTYQDGKRRL 374 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 904,838 Number of extensions: 36911 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 6 Length of query: 414 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 328 Effective length of database: 903,079 Effective search space: 296209912 Effective search space used: 296209912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)