BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1502.p (107 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982663|ref|YP_001352409.1| ferredoxin [Janthinobacterium s... 194 7e-52 gi|152982564|ref|YP_001353330.1| ferredoxin [Janthinobacterium s... 133 2e-33 gi|152982480|ref|YP_001354084.1| ferredoxin [Janthinobacterium s... 102 6e-24 >gi|152982663|ref|YP_001352409.1| ferredoxin [Janthinobacterium sp. Marseille] Length = 107 Score = 194 bits (494), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 92/107 (85%), Positives = 99/107 (92%) Query: 1 MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60 MTHVVT+SC+ CRYTDCVDVCPVDCFREGPNFL+IDPDECIDCAVCVAECPVNAI+AEED Sbjct: 1 MTHVVTESCILCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIFAEED 60 Query: 61 VPADQQQYIALNAELSRNWPSITKTKAPLPEAEEWKDKTDKLQYLQR 107 VPADQQ +I LN +LSR WPSITKTK P+ EAEEWKDKTDKLQYL R Sbjct: 61 VPADQQVFIKLNVDLSREWPSITKTKPPMAEAEEWKDKTDKLQYLAR 107 >gi|152982564|ref|YP_001353330.1| ferredoxin [Janthinobacterium sp. Marseille] Length = 114 Score = 133 bits (335), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 63/107 (58%), Positives = 80/107 (74%), Gaps = 2/107 (1%) Query: 1 MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60 M VVT++C++C+YTDCV VCP+DCF EGPNFLAI+PDECIDC+VCV ECPVNAI + Sbjct: 1 MPFVVTEACIQCKYTDCVVVCPMDCFFEGPNFLAINPDECIDCSVCVPECPVNAIIGATE 60 Query: 61 VPADQQQYIALNAELSRN--WPSITKTKAPLPEAEEWKDKTDKLQYL 105 V +QQ ++ALN ELS++ W I+K K P+P E+W DKL L Sbjct: 61 VAPEQQHFVALNRELSQHPDWKRISKPKEPMPGHEKWAQVKDKLPLL 107 >gi|152982480|ref|YP_001354084.1| ferredoxin [Janthinobacterium sp. Marseille] Length = 114 Score = 102 bits (253), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 67/105 (63%) Query: 1 MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60 M ++VT++C+RC++ DC++VCP F G NF+ I+PD C++C +C CP AI A+ D Sbjct: 1 MAYIVTEACIRCKFMDCIEVCPTYAFHAGENFVVINPDTCVNCGLCEMVCPTQAIKAKGD 60 Query: 61 VPADQQQYIALNAELSRNWPSITKTKAPLPEAEEWKDKTDKLQYL 105 + ++ LNA L++NWP+IT+ +A W +DK ++L Sbjct: 61 ATEKELVFVELNARLAKNWPAITQKGMVPADAGNWIGVSDKKEFL 105 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 232,975 Number of extensions: 7791 Number of successful extensions: 52 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 52 Number of HSP's successfully gapped: 3 Length of query: 107 Length of database: 1,221,021 Length adjustment: 70 Effective length of query: 37 Effective length of database: 962,231 Effective search space: 35602547 Effective search space used: 35602547 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)