BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1500.p
         (411 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981170|ref|YP_001352408.1| Poly-beta-hydroxyalkanoate depo...   685   0.0  

>gi|152981170|ref|YP_001352408.1| Poly-beta-hydroxyalkanoate
           depolymerase [Janthinobacterium sp. Marseille]
          Length = 411

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/407 (77%), Positives = 358/407 (87%)

Query: 1   MLYQLHELNRAFLNPMMQWAETSAKLFSDPVSPLAHTPFSQRIAAGYELLYRLSKEYEKP 60
           MLYQLHELNR+ LNP++QWAE S+KLFSDPVSP A+TPF+Q IAAGYEL+YRL K+Y KP
Sbjct: 1   MLYQLHELNRSLLNPLIQWAEASSKLFSDPVSPFAYTPFAQPIAAGYELMYRLGKDYAKP 60

Query: 61  QFNIGEVPVEGKPVGISEEVVETKPFCRLIHFKKDLPARQSAALKQPTVLVVAPLSGHHS 120
            F+I  V ++GK V I EEV E K FC L+HFKKD+ A+  AALKQPT+L+VAPLSGHH+
Sbjct: 61  HFDISSVNIKGKDVKIIEEVAEEKSFCTLLHFKKDMSAKAYAALKQPTILLVAPLSGHHA 120

Query: 121 TLLRETVRALLQEHDVFITDWTDARMVPVEQGDFHLHDYVYYVQDFIRTLGPDVHVISVC 180
           TLLR+TVR+LL EHDV+ITDW DARMVP+ +G FHLHDY+YY+QDFIR LGP++HVISVC
Sbjct: 121 TLLRDTVRSLLVEHDVYITDWRDARMVPLTEGPFHLHDYIYYIQDFIRQLGPNLHVISVC 180

Query: 181 QPTVPVLAAISLMASANDPKLPKSMTMMGGPIDARKSPTAVNDLATEKPFSWFENTVIYS 240
           QPTVPVLAAISLMAS  DP LPKSMTMMGGPID RKSPT VN+LATEKP+SWFEN VI+S
Sbjct: 181 QPTVPVLAAISLMASERDPHLPKSMTMMGGPIDPRKSPTQVNNLATEKPYSWFENQVIHS 240

Query: 241 VPANYPGFGRKVYPGFLQHAGFVAMNPRRHAQSHWDFYMHLRNGDDASAEEHRKFYDEYN 300
           VPA+YPGFGRKVYPGFLQHAGF+AMNP RHAQSHWDFYMHLR GD+ SAEEHRKFYDEYN
Sbjct: 241 VPASYPGFGRKVYPGFLQHAGFIAMNPGRHAQSHWDFYMHLREGDNESAEEHRKFYDEYN 300

Query: 301 AVLDMPAEFYLETIKVVFQDFNLARGTWEIEGNLVRPQDIKSVALFTIEGELDDISGSGQ 360
           AVLDMPAE+YLETIK VFQ+  L  GTWE+EG LV+PQDIKSVALFTIEGE DDISG GQ
Sbjct: 301 AVLDMPAEYYLETIKTVFQEHRLPLGTWEVEGKLVKPQDIKSVALFTIEGERDDISGLGQ 360

Query: 361 TQAAQELCSSIPKARKQHFTVPKAGHYGIFSGRRWREIVCPKIGEFI 407
           T AAQ+LCSSI K+ KQ FT P+ GHYGIFSGR+WREI+CPKI +FI
Sbjct: 361 THAAQDLCSSIAKSNKQQFTAPQCGHYGIFSGRKWREIICPKITDFI 407


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,009,242
Number of extensions: 42540
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 325
Effective length of database: 903,079
Effective search space: 293500675
Effective search space used: 293500675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)