BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1499.p
         (243 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981481|ref|YP_001352407.1| electron transport complex prot...   332   2e-92

>gi|152981481|ref|YP_001352407.1| electron transport complex protein
           RnfB [Janthinobacterium sp. Marseille]
          Length = 233

 Score =  332 bits (850), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 202/233 (86%)

Query: 1   VPPSATTASATLADRLEDLLPQTQCTKCGYAACRPYAEAMAEGRASHNQCPPGGAEGVAR 60
           +P  +  +  +LAD+LEDLLPQTQCTKCGY ACRPYAEA+A+G A++NQCPPGG EGVAR
Sbjct: 1   MPAVSPPSQKSLADQLEDLLPQTQCTKCGYPACRPYAEAIADGSANYNQCPPGGIEGVAR 60

Query: 61  LAQLLGQPVIPLNPVHGSEQPRRLAVIDEQVCIGCTLCIQACPVDAIAGAAKQMHTVIDA 120
           LA LLG+PVIP+NPV+G E+PR +AVIDE +CIGCTLCIQACPVDAI GAAKQMHT+++ 
Sbjct: 61  LAHLLGKPVIPINPVNGHERPRPVAVIDESLCIGCTLCIQACPVDAIVGAAKQMHTIVND 120

Query: 121 LCTGCDLCVAPCPVDCISMVEATPGRTGWQAWSQEQADAARQRYQWRTLRLRRDKEENDA 180
           LCTGCDLCVAPCPVDCI+MVE TPG+TGW AWSQ QAD AR R+ +RT RL+R+KEENDA
Sbjct: 121 LCTGCDLCVAPCPVDCIAMVEVTPGKTGWDAWSQAQADDARARHDFRTQRLQREKEENDA 180

Query: 181 RLAAKAAAKLQEVEAAAAGTPEEQAELARKKAIIQAAMERSRLKKLQAEQAAK 233
           RLAAKAAAKLQ V+A    + EE+AE ARKKAIIQAA+ER+RLKK QAE+ AK
Sbjct: 181 RLAAKAAAKLQAVQAETPASEEEKAEQARKKAIIQAAIERARLKKEQAEKDAK 233


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.128    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 490,727
Number of extensions: 17716
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 162
Effective length of database: 921,564
Effective search space: 149293368
Effective search space used: 149293368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)