BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1498.p
         (216 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979830|ref|YP_001352406.1| DNA-(apurinic or apyrimidinic s...   386   e-109
gi|152980113|ref|YP_001354812.1| A/G-specific adenine glycosylas...    57   1e-09

>gi|152979830|ref|YP_001352406.1| DNA-(apurinic or apyrimidinic
           site) lyase [Janthinobacterium sp. Marseille]
          Length = 216

 Score =  386 bits (991), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/216 (85%), Positives = 197/216 (91%)

Query: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MN  KRREIF RLR ANP PTTELEY TPF+LLIAVLLSAQATDVSVNKATRKLYP A T
Sbjct: 1   MNAEKRREIFNRLRAANPHPTTELEYQTPFQLLIAVLLSAQATDVSVNKATRKLYPHAGT 60

Query: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGEVPESREALEALPGVGRK 120
           P+ IY +GVD L+PYIQTIGLYRTKAKNVIETCRILI EHGGEVP +RE LEALPGVGRK
Sbjct: 61  PKKIYALGVDGLIPYIQTIGLYRTKAKNVIETCRILIAEHGGEVPRTREELEALPGVGRK 120

Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180
           TANVV+NTAFG  TIAVDTHIFRVSNRTGLAPGK+VD VE+KL+KFVAPEF+QDAHHWLI
Sbjct: 121 TANVVMNTAFGEATIAVDTHIFRVSNRTGLAPGKNVDIVEQKLMKFVAPEFQQDAHHWLI 180

Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPAKGV 216
           LHGRYTCIAR P+CWNC+IADLCE+K KTPLPAKGV
Sbjct: 181 LHGRYTCIARTPKCWNCVIADLCEYKSKTPLPAKGV 216


>gi|152980113|ref|YP_001354812.1| A/G-specific adenine glycosylase
           [Janthinobacterium sp. Marseille]
          Length = 384

 Score = 56.6 bits (135), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 8/140 (5%)

Query: 70  DQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGEVPESREALEALPGVGRKTANVVLNTA 129
           +++M +   +G Y ++A+N+ +  + ++ E+GG  P   E LE LPG+GR TA  +   +
Sbjct: 96  EEVMAHWSGLGYY-SRARNLHKCAQTIVAEYGGVFPSDPELLEQLPGIGRSTAAAISAFS 154

Query: 130 FGHPTIAVDTHIFRVSNRT-GLA--PGKDVDEVERKLIKFVA--PEFRQDAH-HWLILHG 183
           +G     +D ++ RV  R  G+   PG+   E E  L + VA  PE   +A+   L+  G
Sbjct: 155 YGTRAAILDGNVKRVFARVFGVERYPGEKAVENELWL-RAVALLPENGVEAYTQGLMDLG 213

Query: 184 RYTCIARKPQCWNCIIADLC 203
              C    P C  C +A  C
Sbjct: 214 ATLCTRNSPSCQRCPLAHRC 233


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 448,477
Number of extensions: 16722
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 137
Effective length of database: 928,958
Effective search space: 127267246
Effective search space used: 127267246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)