BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1497.p (412 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino a... 226 3e-60 gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino a... 216 3e-57 gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino a... 119 3e-28 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 87 1e-18 >gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 381 Score = 226 bits (575), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 196/337 (58%), Gaps = 3/337 (0%) Query: 61 IGFAGPLSGPNMGVGRSMRNGAQLAIDEANRRGLRIAGKVYRLKLLSQDDRADPVTAEYV 120 IG GP++G + +G+ NGA+LA++E N +G+ I GK +L+ + +DD ADP A Sbjct: 31 IGHVGPVTGTDAHMGKDNENGARLAVEELNAKGVVINGKKVKLQYMPEDDAADPKQATAA 90 Query: 121 ARYLASQHVLAVVGHWTSGTSLVAAPVYHAAGVIQVTPSAMSRKLTALSYPRIFRTIPNN 180 A L +V V+GH SG ++ A+ +Y AG++Q++PS+ S K T + FR + N+ Sbjct: 91 ATKLVDSNVAVVIGHLNSGATIPASRIYANAGIVQISPSSTSPKYTQQGFKTAFRVVAND 150 Query: 181 ESMGRWSAQYAVGKLGVRTVVTIDDRTPFGQGLAEQFAQEVQAQGAQVVGRYSVSDKTSD 240 +GR QYAV L + V IDDRT +GQG+AE+FA+ V+A G VV ++K +D Sbjct: 151 AQLGRVLGQYAVKSLAAKNVAVIDDRTAYGQGVAEEFAKGVKAAGGTVVASQYTNNKATD 210 Query: 241 FNAPLLQARKQAPDLIFFGGLDWQAAVLVKSIRRLKLEARFMAAAG--TVGLPFLMGAGA 298 FNA L + + PD+IFFGG+D +++ +++L + A+FM G T LP L GAG Sbjct: 211 FNAILTAIKAKKPDVIFFGGMDAVGGPMLQQMKQLGINAKFMGGDGICTGSLPGLAGAGL 270 Query: 299 DANGALVLEPGPPED-KMPGWKSFRQRYSESFDSSIDLYSVFSYEAAQAIIEGLRRAGST 357 N E G ED + G FR Y + F + + ++Y+A A+++ +++A S Sbjct: 271 GENNVYCAEAGGVEDARKAGLDKFRAAYKKRFGIDVIYTAAYAYDATYAVVDAMQKAKSW 330 Query: 358 DSDAVARAMHRLRFEGVSGPVAFNEEGDLLNPGFTMY 394 +S + ++ + GV+G +AF+ +GD+ + T+Y Sbjct: 331 ESAKYLPELTKISYPGVTGTIAFDAKGDIKDGTLTLY 367 >gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 376 Score = 216 bits (549), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/344 (33%), Positives = 191/344 (55%), Gaps = 3/344 (0%) Query: 58 TLLIGFAGPLSGPNMGVGRSMRNGAQLAIDEANRRGLRIAGKVYRLKLLSQDDRADPVTA 117 T+ IG A PL+GP G+ +NGA+LA+DE N + + + GK R +LLS+DD ADP Sbjct: 26 TVKIGLAAPLTGPQAFYGKDSQNGARLAVDELNEKKIVVGGKQLRFELLSEDDAADPKQG 85 Query: 118 EYVARYLASQHVLAVVGHWTSGTSLVAAPVYHAAGVIQVTPSAMSRKLTALSYPRIFRTI 177 VA+ HV AV+GH SGT++ AA +YH G+ ++PSA S +LT +Y FR + Sbjct: 86 AAVAQRFCDLHVNAVIGHTNSGTAIPAARIYHQCGLPNLSPSATSPELTKSAYNTTFRML 145 Query: 178 PNNESMGRWSAQYAVGKLGVRTVVTIDDRTPFGQGLAEQFAQEVQAQGAQVVGRYSVSDK 237 N+ ++ + A Y V L ++T+ +DDR+ +GQGLA+ F ++ QVV + +DK Sbjct: 146 ANDSTLAQALAAYTVNVLKLKTIAVVDDRSAYGQGLADAFRTALRNTPVQVVTQQYTNDK 205 Query: 238 TSDFNAPLLQARKQAPDLIFFGGLDWQAAVLVKSIRRLKL-EARFMAAAG--TVGLPFLM 294 DF+A L + + PD +FFGG+D Q + +++ + +L L +F+ G T G+ Sbjct: 206 AVDFSAILTAIKGRNPDAVFFGGMDPQGSAMLRQMEQLGLTRQKFIGGDGICTQGMEQRT 265 Query: 295 GAGADANGALVLEPGPPEDKMPGWKSFRQRYSESFDSSIDLYSVFSYEAAQAIIEGLRRA 354 + + G D+ +++++RY E F ++ +SY+A A+ + ++ A Sbjct: 266 EGMKIQDNLVCAHSGIALDRTTASRAWKKRYDEKFPGQFQMHGPYSYDAVLAVAKAMQAA 325 Query: 355 GSTDSDAVARAMHRLRFEGVSGPVAFNEEGDLLNPGFTMYEVKD 398 S + AM ++ F GV V F+ G++ NP ++Y +D Sbjct: 326 NSVEPQKYLPAMGKVHFAGVMSNVQFDARGEIKNPTISIYTYQD 369 >gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 391 Score = 119 bits (298), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 166/350 (47%), Gaps = 17/350 (4%) Query: 61 IGFAGPLSGPNMGVGRSMRNGAQLAIDEANRRGLRIAGKVYRLKLLSQDDRADP-VTAEY 119 I F GPL+G +G RN A LA+ N Y +L++QDD P V + Sbjct: 34 IAFVGPLTGGVSSIGLGGRNSADLAVRLRNAD----PKAKYTYQLVTQDDECRPNVGVQV 89 Query: 120 VARYLASQHVLAVVGHWTSGTSLVAAPVYHAAGVIQVTPSAMSRKLTALSYPRIFRTIPN 179 + A + ++A V H+ S ++ VY+ G+ + A+ L ++Y F+ + Sbjct: 90 ATKIAADKSIVAGVTHFCSAVAMGTVGVYNRFGLPVIVWGAV---LPEITYGNDFKEVHR 146 Query: 180 -NESMGRWS---AQYAVGKLGVRTVVTIDDRTPFGQGLAEQFAQEVQAQGAQVVGRYSVS 235 N +M S A++ + K G + I D T +G+G + F++ V+ G V+ + V+ Sbjct: 147 VNGTMINQSEVAAKFMISK-GYKKWAIIHDTTDYGKGHNKYFSEFVKKNGGTVLSTFGVT 205 Query: 236 DKTSDFNAPLLQARKQAPDLIFFGGLDWQAAVLVKSIRRLKLEARFMAAAGTVGLPFLMG 295 DF L + R+ PD+++FGGL + + +L ++A+F +G ++ G Sbjct: 206 ADQQDFTTELTKIRELKPDVVYFGGLTPLGVRIRTQMEKLGIKAQFEGTSGIKSDAYIQG 265 Query: 296 AGAD-ANGALVLEPGPPEDKMPGWKSFRQRYS-ESFDSSIDLYSVFSYEAAQAIIEGLRR 353 G A G+L G P +K+PG F +Y + + + Y F++ AA I++ + + Sbjct: 266 VGEKVAEGSLSFIEGAPWEKIPGGLFFTAKYQLQKYSEPPEAYGPFAFAAANLIMDAVEK 325 Query: 354 AGSTDSDAVARAMHRLR-FEGVSGPVAFNEEGDLLNPGFTMYEVKDQRWV 402 G D V +++ + + + G V F++ + P T Y V+D +WV Sbjct: 326 VGP-DRKKVRDVLNQTKDVDTLIGKVTFDDHRQNIVPLVTKYVVEDGKWV 374 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/361 (23%), Positives = 156/361 (43%), Gaps = 29/361 (8%) Query: 58 TLLIGFAGPLSGPNMGVGRSMRNGAQLAIDEANRRGLRIAGKVYRLKLLSQDDRADPVTA 117 T+ IG PL+GP G + NGA++A D N+ G + GK +++L+ +D++++P A Sbjct: 28 TIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNG-GVLGK--KIQLVIEDNKSNPREA 84 Query: 118 -EYVARYLASQHVLAVVGHWTSGTSLVAAPVYHAAGVIQVTPSAMSRKLTALSYPRIFRT 176 V + + V ++G W+S +L P V V +A S K+T P +FRT Sbjct: 85 VNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEVPLVVEAASSSKITTAGNPWVFRT 144 Query: 177 IPNNESMGRWSAQYAVG-KLGVRTVVTIDDRTPFGQGLAEQFAQEVQAQGAQVVGRYSVS 235 P + + ++ G ++ + +G G A +F + ++A+G + +++ Sbjct: 145 SPTSAMEAQAFSKVIDGYNPAIKKADFLVVNNDWGLGAAVEFKKMLEAKGIAIGRTETMT 204 Query: 236 DKTSDFNAPLLQARKQAPDLIFFGGLDWQAAVLVKSIRRLKLEARFMAAAGTVGLPFLMG 295 +D +A L + D +F Q + ++ +L R + G P L Sbjct: 205 PDMTDLSAQLAALKGSGSDTVFVTSGIEQLTLAIRQAGEQRLPQRIITTGGAFPEPLLKT 264 Query: 296 AGAD---ANGALVLEPGPPEDK---------MPGWKSFRQRYSESFDSSIDLYSVFSYEA 343 G + L P PE M GWK S + + + ++A Sbjct: 265 PGPKGYVSQHLLFFAPWAPERAKHPAVAKAFMDGWK------SRGLELAGQVEGFRGFDA 318 Query: 344 AQAIIEGLRRAGSTDSDAVARAMHRLRFEGVSGPVAFN------EEGDLLNPGFTMYEVK 397 I E ++ AG + A+ A+ +++ +G +G +AF+ +E NP + E+K Sbjct: 319 ILTIAEAIKLAGKAEPAAIRDALWKVQVKGTNGDIAFSKVGVAGKESGQANPNVYVVELK 378 Query: 398 D 398 D Sbjct: 379 D 379 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 909,181 Number of extensions: 35736 Number of successful extensions: 123 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 4 Length of query: 412 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 326 Effective length of database: 903,079 Effective search space: 294403754 Effective search space used: 294403754 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)