BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1494.p
         (106 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983024|ref|YP_001352402.1| cytochrome c553 [Janthinobacter...   160   2e-41

>gi|152983024|ref|YP_001352402.1| cytochrome c553 [Janthinobacterium
           sp. Marseille]
          Length = 106

 Score =  160 bits (404), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 87/106 (82%)

Query: 1   MKKHLVFLAFVGVFGSASAADIVGNAKAAENKISNCIGCHGIPGYKASYPEVYQVPMLGG 60
           MKK    LA  GV    +AA+IVG+AKA  NK+S CIGCHGIPGYKA++PEVYQVPM+GG
Sbjct: 1   MKKLFALLALAGVAHITTAAEIVGDAKAGANKVSMCIGCHGIPGYKATFPEVYQVPMIGG 60

Query: 61  QSAKYIENALHAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 106
           QS KYI  ALHAY+KG+R HPSM G+A SLSDQDIAD+AAYYSQQK
Sbjct: 61  QSDKYIAAALHAYKKGDRNHPSMRGIAESLSDQDIADVAAYYSQQK 106


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 230,685
Number of extensions: 7783
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 36
Effective length of database: 962,231
Effective search space: 34640316
Effective search space used: 34640316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)