BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1493.p
         (747 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981168|ref|YP_001352401.1| site-specific recombinase trans...   788   0.0  

>gi|152981168|ref|YP_001352401.1| site-specific recombinase
           transmembrane protein [Janthinobacterium sp. Marseille]
          Length = 712

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/717 (57%), Positives = 519/717 (72%), Gaps = 16/717 (2%)

Query: 1   MKFLFFKMLVVWRRMRHGMQARYMDRQDVGRQLEVLMRRIDPAASWHERANWMIDVAEWL 60
           MK  F ++  VWRR R G    + D     +Q+E L RR DP A+WH RANWMID+A+W+
Sbjct: 1   MKISFLRIFAVWRRFRRGALRHHADNARYLQQIEPLARRADPNATWHARANWMIDLADWI 60

Query: 61  RHRPAVSLLDRQAWHQVRRQRLVIMLDWLDQHRDVRRAVQNALQKTLREANGPELFSTTG 120
           R  P VSLLD   W +++  R+  MLDWLD++R+VR+ VQ  L+KTLREA GPELFS TG
Sbjct: 61  RREPKVSLLDEDEWSRIKTLRIRYMLDWLDENREVRQTVQATLRKTLREATGPELFSATG 120

Query: 121 LPHEPGFFGELSERLARLILPRHLSPTDLSSLFTAMFPDPDDAAWLLELDNDLLVRLWKL 180
           LP E  FF ELSER+ + +LP  L   DLS+LFTAMFPD  DA WLLELD   L RLWKL
Sbjct: 121 LPRESAFFSELSERVVKHVLPPPLGQHDLSTLFTAMFPDESDAEWLLELDPKTLSRLWKL 180

Query: 181 MADDGISHMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMESWL 240
            ADDGI+H Y +QI+EA+ YL T V+A GISPAFRQRLEP+MP+ ATPF+ALRRE+E++L
Sbjct: 181 GADDGIAHGYRKQIDEAMLYLVTMVIAIGISPAFRQRLEPRMPLLATPFMALRRELENYL 240

Query: 241 RAQPGDLGALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDV 300
                D GALRSVRML+AVC AQTD+IYAHLDEYGVSV LVY VERMRA L R+ RL+D+
Sbjct: 241 MTSERDEGALRSVRMLIAVCQAQTDKIYAHLDEYGVSVGLVYNVERMRAQLTRVARLLDL 300

Query: 301 RSGVPGPLISPAVPGLAAKAGAGAGRMQLLLCDLIAAHHHRDSVRGLMRRSFALLARKMV 360
           R+               +    G+G++Q +L DLI AHH R SVR L+ RSF+LLARKMV
Sbjct: 301 RN--------------TSHVEEGSGQVQAVLVDLIIAHHRRSSVRELVNRSFSLLARKMV 346

Query: 361 ERNADHREQAIARDGAGYRKVMRAGLLGGAVIAGTALVKQSLSTLGVVHFVDGALASLNY 420
           ERNA+H E  IA D + YR +++A LLGG + A TAL K  ++ LG+ HF +GA  S+NY
Sbjct: 347 ERNANHGEHYIASDRSEYRAMLKAALLGGFITAFTALAKVGITGLGLAHFFEGAFLSVNY 406

Query: 421 AASFLLIAALGGVLATRQPAVTAPALASRMGDLDT-EGMRELIAESGQLLRSQSAGIFGN 479
           A SFL+I A+GGVLAT+QPAVTAPALA++MG+L+T EG+REL+A+   LLRSQ+A +FGN
Sbjct: 407 AVSFLIITAIGGVLATKQPAVTAPALAAQMGELETVEGLRELLAKIAALLRSQAAAVFGN 466

Query: 480 LLAVIPVTAALCALGWFALGGKPMSLETARQTLASLSLVGPTPLYAALTGVLLWLASLAA 539
           LLAV PV  AL     F  G   M+ + A   +ASLS VG TPL+AA TG+LLWLASL +
Sbjct: 467 LLAVAPVIVALSFAFLFITGKPVMNADKAHAAIASLSFVGVTPLFAAFTGILLWLASLIS 526

Query: 540 GFADNWFALRRVREVVSNHRRLVHGLGPLRAQRCAAWLERNVATIAGSLALALLLGMAPV 599
           GFADNWFALRR++E +++HRR+VH LG  RAQR A WLE N++ I  +++LA+LLGM PV
Sbjct: 527 GFADNWFALRRLKESIAHHRRMVHALGAARAQRWADWLEHNISGIVANVSLAILLGMVPV 586

Query: 600 VAAFFSLPLDIRHVTLAAGTLTAAVFSLGWSALLTPAFWLAAGGVAVTAMLSVAVAFAFA 659
           +A FF LPLD+RHVTL+  TL AAV +LGW  + TP FWLA  G+A   +L+V VAFA A
Sbjct: 587 IAHFFGLPLDVRHVTLSTATLAAAVSTLGWEVMATPQFWLACVGIAAIGLLNVGVAFACA 646

Query: 660 LALALRSRDLPRRARNVAMRAVLRRFIIRPLFFILPL-PAHAAVQDESDDDDEDDDD 715
           LALALR+RD+P+R R +  RA+LRRF + P  F  P+ P  AA   + ++  E D++
Sbjct: 647 LALALRARDVPKRVRRLVFRAMLRRFTLTPYIFFWPMQPEAAAPAAQLENPAEKDEE 703


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,511,955
Number of extensions: 57265
Number of successful extensions: 299
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 657
Effective length of database: 888,291
Effective search space: 583607187
Effective search space used: 583607187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 133 (55.8 bits)