BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1492.p
         (291 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982281|ref|YP_001352400.1| hypothetical protein mma_0710 [...   486   e-139

>gi|152982281|ref|YP_001352400.1| hypothetical protein mma_0710
           [Janthinobacterium sp. Marseille]
          Length = 284

 Score =  486 bits (1250), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/280 (85%), Positives = 261/280 (93%)

Query: 12  ARFTGSDNYVATDDLKLAVNAALTLQRPLLIKGEPGTGKTMLAEEVAAALGRPLLQWHIK 71
            RF GS +YV T DLKLAVNAALTLQRPLLIKGEPGTGKTMLAEEVAAALG PLLQWHIK
Sbjct: 5   TRFEGSQSYVTTGDLKLAVNAALTLQRPLLIKGEPGTGKTMLAEEVAAALGMPLLQWHIK 64

Query: 72  STTKAQQGLYEYDAVSRLRDSQLGDERVKDIHNYIVKGVLWQAFTSEEPVVLLIDEIDKA 131
           STTKAQQGLYEYDAVSRLRDSQLGDERVK I NYIVKGVLWQAF +++ VVLLIDEIDKA
Sbjct: 65  STTKAQQGLYEYDAVSRLRDSQLGDERVKTIGNYIVKGVLWQAFAADQQVVLLIDEIDKA 124

Query: 132 DIEFPNDLLREIDRMEFYVYETRELVQARHRPLVVITSNNEKELPDAFLRRCFFHYIKFP 191
           DIEFPNDLLRE+DRMEFYVYETRE+V+A+HRPLV+ITSNNEKELPDAFLRRCFFHYIKFP
Sbjct: 125 DIEFPNDLLRELDRMEFYVYETREMVKAKHRPLVIITSNNEKELPDAFLRRCFFHYIKFP 184

Query: 192 DKQTMRQIVDVHFPHLKRELLAQALEAFYQVREVPGIKKKPSTSELIDWLKLLMAEDIPP 251
           D+ TM QIV VHFP+LKRELLA+ALE FYQ+REV G+KKKPSTSEL+DWLKLL+AEDIPP
Sbjct: 185 DRDTMEQIVAVHFPNLKRELLAKALEVFYQIREVSGLKKKPSTSELLDWLKLLLAEDIPP 244

Query: 252 EALHSQDNQAVVPPLHGALLKNEQDVQLFERLVFMSRNHR 291
           EAL SQD++ +VPPLHGALLKNEQD+ LFERLVFMSR +R
Sbjct: 245 EALRSQDDKTIVPPLHGALLKNEQDINLFERLVFMSRTNR 284


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 673,783
Number of extensions: 26545
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 209
Effective length of database: 917,867
Effective search space: 191834203
Effective search space used: 191834203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)