BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1490.p
         (389 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981267|ref|YP_001352399.1| hypothetical protein mma_0709 [...   611   e-176

>gi|152981267|ref|YP_001352399.1| hypothetical protein mma_0709
           [Janthinobacterium sp. Marseille]
          Length = 382

 Score =  611 bits (1575), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 279/381 (73%), Positives = 334/381 (87%)

Query: 9   VKQAGVPASIKEFLTLLEAMEQQVIAPSLEQFYYLARLTLVKDEANFDKFDRAFGAYFKG 68
           +K A +P SIKEFL LLEA+E++VI+ S + FYYLARLTLVKDEANFDKFDRAF  YFKG
Sbjct: 2   LKDAKIPVSIKEFLVLLEALEKEVISLSFDDFYYLARLTLVKDEANFDKFDRAFSLYFKG 61

Query: 69  VETIFEKRPDIPLEWLLKQLQRELTPEQKAAVEKFGYDKLMERLKQLLEEQKERHEGGSK 128
           + T FE+  +IPL+WLLK   R+L+PE++A ++K+GYDKL ERL+QLL+EQKERHEGGSK
Sbjct: 62  ISTAFEENANIPLDWLLKNAARKLSPEEQALLQKYGYDKLAERLQQLLKEQKERHEGGSK 121

Query: 129 WIGTGGVSPFGHGGYNPEGIRIGGKGGQRSAVKVWEERQYQDYDGQRELGTRNIKVALRR 188
           WIGTGG SPFG+ G NPEGIRIGG+   R+AVKVWE+R Y+DYD  RE+GTRN+KVALRR
Sbjct: 122 WIGTGGTSPFGNSGTNPEGIRIGGESRNRTAVKVWEQRTYRDYDADREIGTRNVKVALRR 181

Query: 189 LRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVGGSMDDHIART 248
           LR+FAR G  +E +LDDT+RATA+NAGYLDI+MQPERKN IKVLML DVGG+MD+HI RT
Sbjct: 182 LRKFARHGAADEFSLDDTVRATANNAGYLDIKMQPERKNNIKVLMLLDVGGTMDEHIQRT 241

Query: 249 EELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFSTWDVLRKYTPDTKLIFVGDA 308
           EELFSAA+ EFKNMEF+YFHNCVYD LW+NN+R+  ERFSTWDVLRKYTPDTK+IFVGDA
Sbjct: 242 EELFSAAKAEFKNMEFYYFHNCVYDQLWRNNQRKRTERFSTWDVLRKYTPDTKVIFVGDA 301

Query: 309 TMSPYEIVQPGGAVEYNNAEAGADWLQRFTSTFPHFVWLNPEPEGLWQYRQSIALIRQLM 368
           TMSPYEI+Q GGAV+Y+N EAGA+WLQRFT TFP+++WLNPEPE +W+YRQSIA+IR+ M
Sbjct: 302 TMSPYEILQVGGAVDYHNEEAGAEWLQRFTKTFPNYIWLNPEPEHIWEYRQSIAIIRRQM 361

Query: 369 NGRMYPLTMDGLEGAMRLLSK 389
           + RMYPLT++GLE  MR LSK
Sbjct: 362 DNRMYPLTLEGLERGMRTLSK 382


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 957,912
Number of extensions: 39790
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 304
Effective length of database: 906,776
Effective search space: 275659904
Effective search space used: 275659904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)