BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1487.p
         (140 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981862|ref|YP_001355216.1| Cu(I)-responsive response regul...   152   9e-39
gi|152981934|ref|YP_001353444.1| putative transcriptional regula...    77   5e-16
gi|152981900|ref|YP_001353487.1| MerR family transcriptional reg...    74   2e-15

>gi|152981862|ref|YP_001355216.1| Cu(I)-responsive response
           regulator [Janthinobacterium sp. Marseille]
          Length = 140

 Score =  152 bits (384), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 94/139 (67%), Gaps = 5/139 (3%)

Query: 1   MNIGEAASASGVSAKMIRHYEETGLIPKAGRTDAGYRVYGQRDVHLLRFVRQARQLGFSM 60
           MNIGEAA ASG++AKMIRHYE   LI  + R++AGYR Y + D+H LRF+++AR+LGF++
Sbjct: 1   MNIGEAAHASGITAKMIRHYESIALIKPSARSEAGYRTYNENDLHTLRFIKRARKLGFAL 60

Query: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIGELDQRIHELQTMKATLERLVQDCHGDHRPDC 120
            Q+ DL+ LW D  R S  VK +A  H+ +L++R+ EL  M+ TL+ L   C+GD R DC
Sbjct: 61  DQIRDLLSLWNDAHRASADVKAIALAHVADLNKRVAELTEMRDTLQHLALSCNGDSRADC 120

Query: 121 PILDALGA-----EQDCCS 134
           PIL  L         DCC+
Sbjct: 121 PILQGLAQADGDDAHDCCT 139


>gi|152981934|ref|YP_001353444.1| putative transcriptional regulator
           MerR [Janthinobacterium sp. Marseille]
          Length = 144

 Score = 76.6 bits (187), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 3/132 (2%)

Query: 1   MNIGEAASASGVSAKMIRHYEETGLIPKAGRTDAGYRVYGQRDVHLLRFVRQARQLGFSM 60
           + IG  A A+GVS + IR Y+  GL+P+  +     R YG+ DV  +RFV+ A++LGFS+
Sbjct: 8   LTIGIFAKAAGVSVETIRFYQRKGLLPEPDKPYGSIRRYGEADVTRVRFVKSAQRLGFSL 67

Query: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIGELDQRIHELQTMKATLERLVQDCHGDH-RPD 119
            ++++L  L L+      +   LA+  + ++ +++ +L  M+A L  LV  CH       
Sbjct: 68  DEIAEL--LRLEDGTHCEEASNLAEHKLKDVREKMADLARMEAVLSDLVCACHARKGNVS 125

Query: 120 CPILDALGAEQD 131
           CP++ +L  +++
Sbjct: 126 CPLIASLQGKKE 137


>gi|152981900|ref|YP_001353487.1| MerR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 151

 Score = 74.3 bits (181), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 1   MNIGEAASASGVSAKMIRHYEETGLIPKAGRTDAGYRVYGQRDVHLLRFVRQARQLGFSM 60
           + IGE A  +G S + IR+YE+  L+P+A R+ + YR+YG   V  L+F+R  R L  ++
Sbjct: 6   LKIGELALQTGSSVETIRYYEQQNLLPQAMRSSSNYRLYGDEHVRRLQFIRHCRSLDMTL 65

Query: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIGELDQRIHELQTMKATLERLVQDCHGDHR-PD 119
            ++  L+            V  L   HI  +  RI EL+ ++  L++L   C       +
Sbjct: 66  DEIRTLLSFRDTPEENCAGVNTLLDKHIEHVSHRIKELKALQTELKQLRSRCLTTQTVEE 125

Query: 120 CPILDALGAEQD 131
           C IL  L   +D
Sbjct: 126 CGILQGLANAED 137


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 321,273
Number of extensions: 11642
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 3
Length of query: 140
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 66
Effective length of database: 947,443
Effective search space: 62531238
Effective search space used: 62531238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)