BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1485.p
         (150 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981900|ref|YP_001353487.1| MerR family transcriptional reg...   201   2e-53
gi|152981862|ref|YP_001355216.1| Cu(I)-responsive response regul...    83   9e-18
gi|152981934|ref|YP_001353444.1| putative transcriptional regula...    79   8e-17

>gi|152981900|ref|YP_001353487.1| MerR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 151

 Score =  201 bits (511), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/150 (64%), Positives = 114/150 (76%), Gaps = 1/150 (0%)

Query: 1   MDTLKIGELAGQADCPVETIRYYEKEALLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLD 60
           +  LKIGELA Q    VETIRYYE++ LLP+  RS SNYRLYG  HV RLQFIRHCRSLD
Sbjct: 3   LQALKIGELALQTGSSVETIRYYEQQNLLPQAMRSSSNYRLYGDEHVRRLQFIRHCRSLD 62

Query: 61  MTLEEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRIAQLQALQAQLQQLRAQCETEQP 120
           MTL+E+R LL  RD PE+NC  VN LLDKHI HV+ RI +L+ALQ +L+QLR++C T Q 
Sbjct: 63  MTLDEIRTLLSFRDTPEENCAGVNTLLDKHIEHVSHRIKELKALQTELKQLRSRCLTTQT 122

Query: 121 ARDCGILQGLASLPDEMKPANLGSHGGGCH 150
             +CGILQGLA+  D  +P  LG+HGGGCH
Sbjct: 123 VEECGILQGLANAEDS-EPKKLGTHGGGCH 151


>gi|152981862|ref|YP_001355216.1| Cu(I)-responsive response
           regulator [Janthinobacterium sp. Marseille]
          Length = 140

 Score = 82.8 bits (203), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 4   LKIGELAGQADCPVETIRYYEKEALLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLDMTL 63
           + IGE A  +    + IR+YE  AL+    RS + YR Y    +  L+FI+  R L   L
Sbjct: 1   MNIGEAAHASGITAKMIRHYESIALIKPSARSEAGYRTYNENDLHTLRFIKRARKLGFAL 60

Query: 64  EEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRIAQLQALQAQLQQLRAQCETEQPARD 123
           +++R+LL L +   +   +V A+   H+  + +R+A+L  ++  LQ L   C  +  A D
Sbjct: 61  DQIRDLLSLWNDAHRASADVKAIALAHVADLNKRVAELTEMRDTLQHLALSCNGDSRA-D 119

Query: 124 CGILQGLA 131
           C ILQGLA
Sbjct: 120 CPILQGLA 127


>gi|152981934|ref|YP_001353444.1| putative transcriptional regulator
           MerR [Janthinobacterium sp. Marseille]
          Length = 144

 Score = 79.3 bits (194), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 2/130 (1%)

Query: 1   MDTLKIGELAGQADCPVETIRYYEKEALLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLD 60
           ++ L IG  A  A   VETIR+Y+++ LLPEP +   + R YG   V R++F++  + L 
Sbjct: 5   VEKLTIGIFAKAAGVSVETIRFYQRKGLLPEPDKPYGSIRRYGEADVTRVRFVKSAQRLG 64

Query: 61  MTLEEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRIAQLQALQAQLQQLRAQCETEQP 120
            +L+E+ ELLRL D    +C E + L +  +  V +++A L  ++A L  L   C   + 
Sbjct: 65  FSLDEIAELLRLEDG--THCEEASNLAEHKLKDVREKMADLARMEAVLSDLVCACHARKG 122

Query: 121 ARDCGILQGL 130
              C ++  L
Sbjct: 123 NVSCPLIASL 132


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 290,414
Number of extensions: 8081
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 3
Length of query: 150
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 75
Effective length of database: 943,746
Effective search space: 70780950
Effective search space used: 70780950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)