BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1481.p
         (462 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981343|ref|YP_001352485.1| copper resistance protein A [Ja...   104   1e-23
gi|152982934|ref|YP_001353413.1| copper resistance protein A [Ja...    89   4e-19

>gi|152981343|ref|YP_001352485.1| copper resistance protein A
           [Janthinobacterium sp. Marseille]
          Length = 628

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 8/159 (5%)

Query: 75  KEFHLVAE--PVVREIAPGMKANLWGYNGQSPGPTIEVVEGDRVRIFVTNKLPEATSVHW 132
            EF LV E  PV     PG+ A +   NG  P PT+   EG+ V I V NKL E+TS+HW
Sbjct: 57  NEFDLVVEELPVNFTGKPGLAATI---NGSLPAPTLRWREGETVTIRVHNKLKESTSIHW 113

Query: 133 HGQRLPNGMDGVSGLTQPAIPPGKTYVYEFTARRAGSFMYHPHADEMVQMAMGMMGFWVT 192
           HG  LP  MDGV G++   IP G T+ Y F  +++G++ YH H+   +Q   GM G  + 
Sbjct: 114 HGIILPYQMDGVPGISFAGIPAGTTFTYRFKVQQSGTYWYHSHSG--MQELTGMYGAIII 171

Query: 193 HPKDPGFMRVDRDFVFLMNAY-DIAPGATVPKVSTMLDF 230
            P  P  +R DRD V L++ + D  P     K+ +  D+
Sbjct: 172 DPAGPETIRADRDHVVLLSDWTDEDPMRVFAKLKSQGDY 210


>gi|152982934|ref|YP_001353413.1| copper resistance protein A
           [Janthinobacterium sp. Marseille]
          Length = 643

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 2/114 (1%)

Query: 100 NGQSPGPTIEVVEGDRVRIFVTNKLPEATSVHWHGQRLPNGMDGVSGLTQPAIPPGKTYV 159
           NG  P PT+   EG+ V I VTN+L  +TS+HWHG  LP  MDGV G++   I PG+T+ 
Sbjct: 93  NGTLPAPTLRWKEGETVTIRVTNRLAVSTSIHWHGIILPFQMDGVPGISFNGIAPGETFT 152

Query: 160 YEFTARRAGSFMYHPHADEMVQMAMGMMGFWVTHPKDPGFMRVDRDFVFLMNAY 213
           Y F  +++G++ YH H+    Q   GM G  +  P +   +  DR+ V L++ +
Sbjct: 153 YRFKVQQSGTYWYHSHSG--FQEQTGMFGAIIIDPAEGKDIAADREHVLLLSDW 204


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,169,526
Number of extensions: 51157
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 462
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 375
Effective length of database: 899,382
Effective search space: 337268250
Effective search space used: 337268250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)