BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1478.p
         (289 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980435|ref|YP_001352820.1| formyltetrahydrofolate deformyl...   513   e-147
gi|152980492|ref|YP_001354260.1| phosphoribosylglycinamide formy...    88   6e-19

>gi|152980435|ref|YP_001352820.1| formyltetrahydrofolate deformylase
           [Janthinobacterium sp. Marseille]
          Length = 288

 Score =  513 bits (1322), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 239/287 (83%), Positives = 263/287 (91%)

Query: 3   HPEYILTLSCLDQRGIVHRVSGFLADHGCNIIDSAQFGDAQSKLFFMRVHFASEDGAMSD 62
           HPEYIL LSCLDQRGIV RVSGFLA HGCNII+SAQFGDAQS+LFFMRV+FA+ED +++D
Sbjct: 2   HPEYILNLSCLDQRGIVQRVSGFLAGHGCNIIESAQFGDAQSQLFFMRVYFAAEDSSVND 61

Query: 63  AALRADFGVLGDSLQMNWQLHDAGKKPRVMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIV 122
             LRADF  +  ++QM WQLHDA KKPRVMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIV
Sbjct: 62  EVLRADFSEMAKTMQMTWQLHDAQKKPRVMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIV 121

Query: 123 SNHTDFYQLAASYNIPFHHLPLATGSSAQVKRAQEQRIMEIVEANQIDLVVLARYMQILS 182
           SNHTDFYQLAASYNIPFHHLPLA G+S + KRAQE R++EI ++ +IDLVVLARYMQILS
Sbjct: 122 SNHTDFYQLAASYNIPFHHLPLAPGASEEAKRAQEDRVLEIAKSAEIDLVVLARYMQILS 181

Query: 183 PEMCEALRGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGV 242
           P MC+AL+GRAINIHHSFLPSFKGAKPYYQAH+RGVKLIGATAHFVTGDLDEGPIIEQ V
Sbjct: 182 PHMCQALQGRAINIHHSFLPSFKGAKPYYQAHERGVKLIGATAHFVTGDLDEGPIIEQDV 241

Query: 243 ERVDHSMGPDTLTAIGRDIECVVLARAVKWFTEHRILLNGHKTVIFN 289
           ERVDH+M P TLTAIGRD+ECVVLARAVK+F EHRILLNGHKTV+F 
Sbjct: 242 ERVDHAMNPATLTAIGRDVECVVLARAVKYFIEHRILLNGHKTVVFK 288


>gi|152980492|ref|YP_001354260.1| phosphoribosylglycinamide
           formyltransferase [Janthinobacterium sp. Marseille]
          Length = 209

 Score = 88.2 bits (217), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 1/189 (0%)

Query: 90  RVMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDFYQLAASYNIPFHHLPLATGSS 149
           R+++++S  G  +  ++   ++   P  I A++SN  D   LA +       L +A    
Sbjct: 3   RIVILISGRGSNMRAIIRAAQNEEWPARIAAVISNKADASGLAYAAEHGISTLVVANKDY 62

Query: 150 AQVKRAQEQRIMEIVEANQIDLVVLARYMQILSPEMCEALRGRAINIHHSFLPSFKGAKP 209
              + A +  +   +++   DLVVLA +M++L+         R +NIH S LPSF G   
Sbjct: 63  PS-REAFDAALQSKIDSFMPDLVVLAGFMRVLTTPFVAHYADRMLNIHPSLLPSFVGLAT 121

Query: 210 YYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVERVDHSMGPDTLTAIGRDIECVVLARA 269
           + QA   GVKL GAT HFVT +LD GPI+ Q    V      ++L A   + E ++  RA
Sbjct: 122 HRQALAAGVKLHGATVHFVTAELDHGPIVAQAAVPVLADDTEESLAARVLEQEHIIYPRA 181

Query: 270 VKWFTEHRI 278
           ++ F + R+
Sbjct: 182 IRCFLDGRL 190


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 675,212
Number of extensions: 27266
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 207
Effective length of database: 917,867
Effective search space: 189998469
Effective search space used: 189998469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)