BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1477.p
         (174 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982105|ref|YP_001352819.1| hypothetical protein mma_1129 [...   189   1e-49

>gi|152982105|ref|YP_001352819.1| hypothetical protein mma_1129
           [Janthinobacterium sp. Marseille]
          Length = 226

 Score =  189 bits (479), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 133/174 (76%), Gaps = 5/174 (2%)

Query: 1   MLRSESLFGKRETNSTNSPFSSAGSSVSSSTGGNVTSVNKAAPYPSSVSHAAPAA---TE 57
           MLRS++LFGKRE+N+ N P S+  SS  SS+    +S  KA+   +  + +   A   T 
Sbjct: 47  MLRSDTLFGKRESNTPNPPMSTTNSSTLSSSSTGSSSFPKASTPATGFNSSGATANQHTN 106

Query: 58  ESGSKLTVGPNIKVKG-EIEDCDTLVVEGKVQATINCRVVQIAERGAFKGSAEIDLAEIR 116
           E GSKL VGPNIK+KG EI DCDTLVVEG V+AT++ RV+QIA+ G+FKGSA ID+AEI 
Sbjct: 107 EVGSKLIVGPNIKLKGVEITDCDTLVVEGFVEATMDSRVIQIAKDGSFKGSAGIDIAEIH 166

Query: 117 GEFDGDLTVRQKLVIYSSGKVTGKIRYGKLVIEEGGQLAGDLQVGG-GHEQKDL 169
           G FDG+LTVRQKLVIY+SGKV+GKIRYG +VIEEGGQLAGD+QVGG G + K L
Sbjct: 167 GTFDGELTVRQKLVIYASGKVSGKIRYGNVVIEEGGQLAGDVQVGGTGAQAKSL 220


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.308    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 336,713
Number of extensions: 12460
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 97
Effective length of database: 936,352
Effective search space: 90826144
Effective search space used: 90826144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 126 (53.1 bits)