BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1473.p (334 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983332|ref|YP_001352429.1| sulfonate ABC transporter, peri... 302 2e-83 gi|152983072|ref|YP_001352711.1| sulfonate ABC transporter, peri... 236 2e-63 gi|152981615|ref|YP_001355155.1| ABC-type nitrate/sulfonate/bica... 223 2e-59 gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport sys... 216 2e-57 gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bica... 106 2e-24 >gi|152983332|ref|YP_001352429.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA [Janthinobacterium sp. Marseille] Length = 326 Score = 302 bits (773), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 160/316 (50%), Positives = 210/316 (66%), Gaps = 7/316 (2%) Query: 18 NSKR---RRLLATGLALGTAATLATLAPRPARAASRQ-LRVGYQK-GALSIIRAHGTLEQ 72 N KR RR L L+ L++ P A A S+ LR+GYQK G L I++ GTLE+ Sbjct: 5 NEKRLAKRRTLGY-LSAAAIGALSSGLPNFAGAQSKSVLRIGYQKYGTLVILKGRGTLEK 63 Query: 73 RLAPLGASVKWVEFSAGPVQLEALGAGSIDFGDVGEAPPIFAQAAGTPLVYVGATVPRPY 132 RLA VKW EF AGPV LE L GSIDFG VGEAPPIFAQAAG LVYVG P P Sbjct: 64 RLAAENIEVKWTEFPAGPVLLEGLNVGSIDFGTVGEAPPIFAQAAGADLVYVGNEPPSPT 123 Query: 133 VEAVLVKDDSLLKP-EQLKGKRIALNKGSNVHYFLVKLLQKHGLQYGDVTPVWLAPADAR 191 EA++V +S LK LKGK++ALNKGSNVHY LVK L+K L Y D+ ++LAPADAR Sbjct: 124 SEAIIVPKNSTLKTVADLKGKKVALNKGSNVHYLLVKALEKASLDYKDIETIFLAPADAR 183 Query: 192 AAFERGSVDAWAIWEPYLAAAQQTLKARILADADGVVKNRAYYFSTRDYARDNADLIRIA 251 AAFERGSVDAW IW+P+LAAA++ + AR+LAD G+V N ++ ++R YA N ++ I Sbjct: 184 AAFERGSVDAWVIWDPFLAAAEKQIGARVLADGTGIVANHQFFLASRSYAEKNPKIVSIL 243 Query: 252 LEELAKVDEFAKTRPDDYANELAGILGLPKSVLDVVVRRYHYGTLPITQAILDEQQQIAD 311 L+EL +VD+++ + + L GL +++ +RY YG P+T ++ EQQ+IAD Sbjct: 244 LDELDQVDQWSSKNLAEVSKVLVAQTGLDLPSVELAAKRYSYGVKPVTAEVIAEQQKIAD 303 Query: 312 TFLDLKLIPRKINLRE 327 F +LKLIP+KI +++ Sbjct: 304 VFSNLKLIPKKITVKD 319 >gi|152983072|ref|YP_001352711.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA [Janthinobacterium sp. Marseille] Length = 320 Score = 236 bits (601), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 126/305 (41%), Positives = 187/305 (61%), Gaps = 9/305 (2%) Query: 24 LLATGLALGTAATLATLAPRPARAASRQLRVGYQK-GALSIIRAHGTLEQRLAPLGASVK 82 L T +++ TA LA A RP LRVG+QK G L +++A G LE++LA V+ Sbjct: 16 FLLTVMSVKTA--LAADAYRP-----DVLRVGFQKYGTLVVLKARGDLERKLANNNVKVE 68 Query: 83 WVEFSAGPVQLEALGAGSIDFGDVGEAPPIFAQAAGTPLVYVGATVPRPYVEAVLVKDDS 142 W EF GP LEAL G+IDFG G+ PPIF+QAAG YVG P P A++VK++S Sbjct: 69 WFEFPTGPRLLEALNIGAIDFGVTGDGPPIFSQAAGAKFFYVGYEPPSPKGIALVVKEES 128 Query: 143 LLKP-EQLKGKRIALNKGSNVHYFLVKLLQKHGLQYGDVTPVWLAPADARAAFERGSVDA 201 +K + L GK+IA++KG NVH L++ LQ +GL+ D+ P++LAPA+ RAAFE G+VD Sbjct: 129 SIKSVKDLVGKKIAVSKGGNVHVLLLRALQVNGLKPTDIVPIYLAPAEGRAAFESGAVDG 188 Query: 202 WAIWEPYLAAAQQTLKARILADADGVVKNRAYYFSTRDYARDNADLIRIALEELAKVDEF 261 W ++PYLA Q + + R++ D G+ N +YF++ D++ + L E+ VDE+ Sbjct: 189 WVAFDPYLANVQHSSRTRVIQDGQGLSPNYQFYFASEALTTKRPDVVNLVLSEIKTVDEY 248 Query: 262 AKTRPDDYANELAGILGLPKSVLDVVVRRYHYGTLPITQAILDEQQQIADTFLDLKLIPR 321 A A +LA ++G+ +SV+ ++R YG P+T I QQ+IAD F ++ LIP+ Sbjct: 249 ASKNFSSVAKQLAPLIGMDESVVITALQRMGYGISPVTSEITQSQQKIADMFYEVGLIPK 308 Query: 322 KINLR 326 + + Sbjct: 309 PVRVE 313 >gi|152981615|ref|YP_001355155.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 321 Score = 223 bits (567), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 181/312 (58%), Gaps = 6/312 (1%) Query: 19 SKRRRLLATGLALGTAATLATLAPRPARAASRQLRVGYQK-GALSIIRAHGTLEQRLAPL 77 S +RRL+ G+A A ATL A R LR+GYQK L+I++ G LE+ L PL Sbjct: 5 SNKRRLVLQGMAAAALAGTATLG---TAAEERTLRIGYQKFNTLNILKGTGNLEKALQPL 61 Query: 78 GASVKWVEFSAGPVQLEALGAGSIDFGDVGEAPPIFAQAAGTPLVYVGATVPRPYVEAVL 137 G VKW EF+AGP EAL +IDFG + P FA AAG VY+ A P P A+ Sbjct: 62 GWKVKWFEFAAGPQLTEALNLDAIDFGHAADTPSAFANAAGVNAVYLAAEQPYPKGIAIF 121 Query: 138 VKDDSLLKP-EQLKGKRIALNKGSNVHYFLVKLLQKHGLQYGDVTPVWLA-PADARAAFE 195 V DS ++ ++LKGK+IAL +G NV Y LV+ L++ GL Y D+ P ++ AD RAAF+ Sbjct: 122 VAQDSPIRSIKELKGKKIALGRGWNVQYLLVRALEEVGLTYNDIVPAYVTNAADVRAAFQ 181 Query: 196 RGSVDAWAIWEPYLAAAQQTLKARILADADGVVKNRAYYFSTRDYARDNADLIRIALEEL 255 G+VDA A+W+P+LA Q T RIL D G+ NR ++ + + N ++IRI EL Sbjct: 182 SGNVDAAALWDPFLAGQQITSNPRILRDGSGLSNNRTFHLANPKFVDQNKNIIRILFAEL 241 Query: 256 AKVDEFAKTRPDDYANELAGILGLPKSVLDVVVRRYHYGTLPITQAILDEQQQIADTFLD 315 K + + + P + A LA LG+ VL + R +Y T+PI I+ EQQQI + F Sbjct: 242 KKTNTWTQAHPQETAELLAPQLGVDVKVLRLATERRNYTTVPIDAGIIQEQQQIVEAFYK 301 Query: 316 LKLIPRKINLRE 327 L LI + +++ Sbjct: 302 LNLIKNPVQVKD 313 >gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport system substrate-binding protein [Janthinobacterium sp. Marseille] Length = 317 Score = 216 bits (549), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/287 (40%), Positives = 170/287 (59%), Gaps = 4/287 (1%) Query: 42 PRPARAASRQLRVGYQKGA--LSIIRAHGTLEQRLAPLGASVKWVEFSAGPVQLEALGAG 99 P A+ A +R+GYQK + +++++ GTLEQRL LG V W EF++G LEAL G Sbjct: 24 PAHAQKAGDTVRIGYQKSSTLITVLKTRGTLEQRLGALGVKVSWHEFASGLPLLEALNVG 83 Query: 100 SIDFG-DVGEAPPIFAQAAGTPLVYVGATVPRPYVEAVLVKDDSLLKP-EQLKGKRIALN 157 +ID DV + P+FAQAAG L Y+ P P +A++VK DS +K L+GKR+ Sbjct: 84 AIDVSADVADTVPVFAQAAGAQLTYIAQESPSPSAQAIVVKADSNIKTLADLRGKRVGFA 143 Query: 158 KGSNVHYFLVKLLQKHGLQYGDVTPVWLAPADARAAFERGSVDAWAIWEPYLAAAQQTLK 217 K + HY L+ L+K GL D+ +LAPAD RAAFER ++DAW IW+P+LAA Q+ + Sbjct: 144 KAAGAHYLLIAALEKAGLSLKDIQLAYLAPADGRAAFEREAIDAWVIWDPFLAAVQRQSQ 203 Query: 218 ARILADADGVVKNRAYYFSTRDYARDNADLIRIALEELAKVDEFAKTRPDDYANELAGIL 277 R+L D G+ + YY S+ +A+ D++++ ++ L + ++ K P D A LA + Sbjct: 204 VRVLTDGRGLADYQRYYLSSTPFAKARPDVVKVIVDALQETGKWVKQSPKDAATLLAPVW 263 Query: 278 GLPKSVLDVVVRRYHYGTLPITQAILDEQQQIADTFLDLKLIPRKIN 324 GL ++ R Y + L EQQ+IAD FL L+P+K+N Sbjct: 264 GLDVPTVEQANARRSYEVRAVLPERLGEQQKIADAFLAEGLLPKKVN 310 >gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 332 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 124/239 (51%), Gaps = 11/239 (4%) Query: 22 RRLLATGLALGTAATLATLAPRPARAAS--RQLRVGYQKGALS--IIRAHGTLEQRLAPL 77 RR AL T A L+T A AA+ ++R+ Y + + +++ G LE+++ Sbjct: 3 RRFFIKNTALLTLAGLSTSVSLSAHAAAAPEEIRLDYAYYSPTSLVLKHFGWLEEQVKSS 62 Query: 78 GASVKWVEFSAGPVQLEALGAGSIDFGDVGEAPPIFAQAAGTPL--VYVGATVPRPYVEA 135 G VKW LE L A SIDFG + ++A G P+ VYV RP A Sbjct: 63 GIKVKWTLSQGSNRALEYLSANSIDFGSTAGLAAVLSRANGNPIKSVYV---YSRPEWTA 119 Query: 136 VLVKDDSLLKP-EQLKGKRIALNKGSNVHYFLVKLLQKHGLQYGDVTPVWLAPADARAAF 194 +LV DS +K LKGK+IA KG++ + FL++ L+ +GL+ DV V L AD RAA Sbjct: 120 LLVPKDSPIKTVADLKGKKIAATKGTDPYLFLLRTLKVNGLKKSDVEIVHLQHADGRAAL 179 Query: 195 ERGSVDAWAIWEPYLAAAQQTLKARILADADGVVKNRAYYFSTRDYARDNADLIRIALE 253 E G +DAWA +P++A+++ +R+L + + T D+A+ + ++ L+ Sbjct: 180 ESGRIDAWAGLDPHMASSELQAGSRLLYR-NVAFNTYGFLNVTEDFAKKYPEQVKQVLQ 237 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 741,756 Number of extensions: 30759 Number of successful extensions: 115 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 6 Length of query: 334 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 250 Effective length of database: 910,473 Effective search space: 227618250 Effective search space used: 227618250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)