BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1472.p
         (571 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980579|ref|YP_001353275.1| EriC chloride channel protein [...   617   e-178

>gi|152980579|ref|YP_001353275.1| EriC chloride channel protein
           [Janthinobacterium sp. Marseille]
          Length = 580

 Score =  617 bits (1590), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 358/577 (62%), Positives = 438/577 (75%), Gaps = 13/577 (2%)

Query: 3   HKRDYTADRRLPLLCAIAVVIGVLSTGAAWLLIKLIALFTNLFYFQRLSFAASSPASHTL 62
           H+RD++ D+R+ LLCAIA+VIG +ST AA+LL+  I  FTNLF+FQ  SFA SSPA+HTL
Sbjct: 4   HQRDFSLDKRILLLCAIAIVIGAISTVAAYLLLNSIHFFTNLFFFQTFSFADSSPATHTL 63

Query: 63  G-WIAAVLPVAGGLIVGLMARYGSDKIRGHGIPEAIEAILFGKSRMSPKVALLKPLSSGI 121
           G W+ A LPV GGLI GL+ARYGSDK+RGHGIPEAIEAILF KS+MSPKVA+LKPL+SGI
Sbjct: 64  GVWVIA-LPVLGGLIAGLIARYGSDKVRGHGIPEAIEAILFRKSQMSPKVAVLKPLTSGI 122

Query: 122 VIGSGGPFGAEGPIIMTGGSLGSLLAQWLHLTAAERKTLLVSGACAGMTAIFGTPLAAVL 181
           VIGSGGPFGAEGPIIMTGG++GSL+AQ   ++AAERKTLLV+GA AGMTA+FGTP+AAVL
Sbjct: 123 VIGSGGPFGAEGPIIMTGGAIGSLIAQNFSVSAAERKTLLVAGATAGMTAVFGTPVAAVL 182

Query: 182 LAVELLLFELRPRSLLPVALACAVAGFLRPWMIDAGVLFPLQVAPVAPLALLSCLLAGLA 241
           LAVELLLFE RPRSLLPV LACAVA F RP ++++G LFPL  APV   A   C++AGLA
Sbjct: 183 LAVELLLFEWRPRSLLPVILACAVAAFCRPLLLESGPLFPLHTAPVGMAAFAICIVAGLA 242

Query: 242 SGVLAALLTLALYRIEDGFHRLPLHWMWWPALGGIAVGLGGLLQPRALGVGYDVIADLLN 301
           SG+L+A ++LALYR+ED F +LPLHWMWWPA+GG+ VG+GG  QPRALGVGYDVI+DLLN
Sbjct: 243 SGMLSAGMSLALYRVEDWFGKLPLHWMWWPAIGGLVVGIGGYFQPRALGVGYDVISDLLN 302

Query: 302 QHMLVSAALVLLMVKAVIWLLALGSGTSGGVLAPLLMMGAGLGLVLSPWLPGGSPTLWPL 361
            H+ +S AL LL+VKAVIW++ALGSGTSGGVLAPLLM+GAGLG V++  +PG  PTLWPL
Sbjct: 303 NHIALSVALSLLLVKAVIWVVALGSGTSGGVLAPLLMLGAGLGAVIAHLVPGSDPTLWPL 362

Query: 362 VCMAGVLGSVLGAPLTAIVFAFGLTHAGNALLPLIATTAVAYGVNVLWMKRSIMTEKIAR 421
           VCMA VL  VLGAPLTA +FA GLT   NALLPL+  T V+YG  VL M+RSIMTEKIAR
Sbjct: 363 VCMAAVLAGVLGAPLTAAIFALGLTGDFNALLPLLLATGVSYGFTVLLMRRSIMTEKIAR 422

Query: 422 RGLHVHREYGVDPLERVHVDDLMSVP-QALEAALPAGQALEQCRTGAQVHRYYPVTAQ-G 479
           RGLH++REY VDP ER  V D+M+    ++ A L   +  +Q     Q HR +PV  Q G
Sbjct: 423 RGLHIYREYSVDPQERAFVGDVMTTDIVSIAAGLTLHETAQQYFGSEQRHRSFPVIDQHG 482

Query: 480 RLVGMVA----LRRLRQADPATDCGSLLEPDSGYL---LPHLSARAAAGAMAQRAVARLP 532
            L+GM+     L  +          S+L  DS ++   LP  + +     MA +   RL 
Sbjct: 483 ALLGMLERESLLHHIALHGGDQQLASIL--DSAHMQLALPTETCQVVGRRMAIQHAERLA 540

Query: 533 VVAGPEKQQLVGVLSLSDLARASATHAEEESVREKLL 569
           VVA  E ++L+G++S SDL + + T   EE VRE+L 
Sbjct: 541 VVADKESRRLLGIISRSDLLKPAHTAFHEEHVRERLF 577


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,196,415
Number of extensions: 47184
Number of successful extensions: 248
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 483
Effective length of database: 895,685
Effective search space: 432615855
Effective search space used: 432615855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)