BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1468.p (298 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983043|ref|YP_001352606.1| LysR family transcriptional reg... 143 1e-35 gi|152980802|ref|YP_001354168.1| LysR family transcriptional reg... 135 3e-33 gi|152980163|ref|YP_001352024.1| transcriptional regulator [Jant... 122 3e-29 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 96 2e-21 gi|152982782|ref|YP_001354764.1| LysR family transcriptional reg... 95 5e-21 >gi|152983043|ref|YP_001352606.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 143 bits (360), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 137/257 (53%), Gaps = 10/257 (3%) Query: 8 LNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERR---IRQVLLTE 64 LNA+RAF A+ARHQSF+ AA ELNVT A+ +Q++ LE++LG PLF R +++ T+ Sbjct: 7 LNALRAFEASARHQSFSAAATELNVTPAAVGQQVRGLEEWLGTPLFYRSGTGTSRLMPTD 66 Query: 65 RGRQFFEEASPAFDILATAARRVMRDAPTRTVVINVRPSFAVRWLIPHLADFVERYPGIA 124 ++ + FD L+ R+ + + + + V P+FA +WL+P + F + YP Sbjct: 67 TAQRALPDIRAGFDKLSIGLERLKQASTGGALTVTVSPAFAAKWLMPRIDRFHQAYPQTD 126 Query: 125 PQVVTSTASVGKAGSSFDMAIRRGENNWPERLKVQRFMEDELVLVASPALLQTM-PLVDV 183 ++ T+ ++ S D+ +R G +WP L + ++E+ V SP+ L+ P VD Sbjct: 127 LRLDTNLKALDFLASGIDVGVRYGSGDWPG-LAAIKLADEEIYPVCSPSYLKRHGPFVDP 185 Query: 184 SQIVGHTLLVSRSRRN-----DWDDWRKLVGLKRWRGQAMLHFDHVHFVLQAVVDGLGLA 238 + + GHTL+ S +N W W G + + L ++ VLQA +D G+A Sbjct: 186 AALAGHTLIHDLSMQNHPGFQTWRSWLDAAGFPSVQSERGLQINNSAAVLQAAIDNQGIA 245 Query: 239 LSPVSLADNDLRSGRLV 255 L + DL GRLV Sbjct: 246 LGRSVMMREDLTVGRLV 262 >gi|152980802|ref|YP_001354168.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 135 bits (340), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 10/266 (3%) Query: 8 LNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRIR---QVLLTE 64 LNA+RAF A+ARHQSF+ AA ELNVT A+ + +++LED+LG PLF R +++ TE Sbjct: 7 LNALRAFEASARHQSFSAAAAELNVTPAAVGQLVRSLEDWLGTPLFNRSASGRARLIATE 66 Query: 65 RGRQFFEEASPAFDILATAARRVMRDAPTRTVVINVRPSFAVRWLIPHLADFVERYPGIA 124 ++ E D L+ R+ A + + V P+FA +WL+P + F +P Sbjct: 67 AAQRALPEIRAGLDKLSLGLERLKEGAINGVLTVTVSPAFAAKWLLPRIDTFQAAWPDTD 126 Query: 125 PQVVTSTASVGKAGSSFDMAIRRGENNWPERLKVQRFMEDELVLVASPALLQTMPLVDVS 184 ++ TS V D+ +R G +W L ++ +++E+ V SP LL+ + Sbjct: 127 VRLDTSLKPVDFVALGIDIGVRYGNGDWAG-LIAEKLLDEEIYPVCSPLLLRQKQRLRKP 185 Query: 185 QIVGHTLLV------SRSRRNDWDDWRKLVGLKRWRGQAMLHFDHVHFVLQAVVDGLGLA 238 +G L+ S W W K+ G+ + ++ VLQA +DG G+A Sbjct: 186 TDLGKETLIHDLSIESHKDFPSWKQWLKVAGVDHTETMRGMRINNSAAVLQAAIDGQGIA 245 Query: 239 LSPVSLADNDLRSGRLVCPFPHLRMS 264 L+ +A +D+ + RLV FP ++ + Sbjct: 246 LARSVMARDDVAASRLVRLFPDIKFT 271 >gi|152980163|ref|YP_001352024.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 122 bits (306), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 138/286 (48%), Gaps = 5/286 (1%) Query: 7 PLNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRIRQVLLTERG 66 P++A+ AF AAARH SF +AA+EL +T A S +I+ LE+++G LF R R V LTE G Sbjct: 7 PVHALSAFEAAARHGSFAIAAEELCITPSAFSHRIRLLEEFVGERLFLRDGRSVSLTEFG 66 Query: 67 RQFFEEASPAFDILATAARRVMRDAPTRTVVINVRPSFAVRWLIPHLADFVERYPGIAPQ 126 R++ + A LA V I V P+FA +PHLADF YP I + Sbjct: 67 RRYLDVVRDALRSLADFPLPHRHPLAQPRVKITVPPTFARYLFLPHLADFTALYPDITIE 126 Query: 127 VVTSTASVGKAGSSFDMAIRRGENNWPERLKVQRFMEDELVLVASPALLQTMPLVDVSQI 186 V S A S D+ IR G +P+ ++ E+ + V SPA L+ + + Sbjct: 127 VFLSVPLYDMALSETDLEIRFGAGKYPDT-TTEKLFEEPVFPVVSPAYLEKIGGLKTPAD 185 Query: 187 VGHTLLVSRSRRNDWDDWRKLVGLKRWRGQAMLHFDHVHFVLQAVVDGLGLALSPVSLAD 246 + L+ RS W W ++ GL L D + +L+AV G G+AL+ A+ Sbjct: 186 LQKAQLL-RSALEPWQAWFEVAGLDWPEPATGLRIDDLGLLLEAVRHGYGVALTRKHFAE 244 Query: 247 NDLRSGRLVCPFP-HLRMSLAPYYLGID--AQAGAEALLFAKWLGE 289 + +G +V F L YY+ + + E +LF W+ E Sbjct: 245 EMIANGEVVPLFDIQLTTPQHAYYMVYEQSVRERPEVVLFMNWMME 290 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 129/277 (46%), Gaps = 18/277 (6%) Query: 8 LNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRIRQVLLTERGR 67 L +I F AA SFT AA VT A+SR I LE LG+ LF R RQ+ LT+ GR Sbjct: 10 LGSIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGR 69 Query: 68 QFFEEASPAFDILATAARRVM--RDAPTRTVVINVRPSFAVRWLIPHLADFVERYPGIAP 125 +FE+ A L A R+V + P + I+V + L+P L +F +RYP + Sbjct: 70 VYFEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQV 129 Query: 126 QVVTSTASVGKAGSSFDMAIRRGENNWPERLKVQRFMEDELVLVASPALL------QTMP 179 +V S ++ A ++D+AI RG L ++ E ELVLVA+P+ L +T+ Sbjct: 130 EVHISNRNIDFAEEAYDLAI-RGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLE 188 Query: 180 LVDVSQIVGHTLLVSRSRRNDW------DDWRKLVGLKRWRGQAMLHFDHVHFVLQAVVD 233 + + + L S RR W K V + G + + V ++ Sbjct: 189 DLQKHECIQFE-LPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCA--EDVLGIVTLARS 245 Query: 234 GLGLALSPVSLADNDLRSGRLVCPFPHLRMSLAPYYL 270 G GL + + ++DLR GRLV P + P+ L Sbjct: 246 GAGLVQTYRFIVEDDLREGRLVELLPQFGATSRPFIL 282 >gi|152982782|ref|YP_001354764.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 126/266 (47%), Gaps = 10/266 (3%) Query: 7 PLNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRIRQVLLTERG 66 P+ + AF A AR S L A+EL ++ A+S +IK LE+ + LF + + +LT G Sbjct: 10 PIPCLIAFEARARLGSGVLVARELCISPSAVSHRIKQLEEATNLQLFRKTSGEAVLTADG 69 Query: 67 RQFFEEASPAFDILATAARRVMRDAPTRTVV-INVRPSFAVRWLIPHLADFVERYPGIAP 125 + + E A + L+ R + TR + I P+FA + +IP L+ E +P + Sbjct: 70 QAYLEAVRNALNTLSHFGRNPASNTKTRKQLRIAAPPTFAYQIIIPRLSLLQEHFPALRF 129 Query: 126 QVVTSTASVGKAGSSFDMAIRRGENNWPERLKVQRFMEDELVLVASPALL-QTMPLVDVS 184 ++ S VG D+ IR G ++P V R ++++++ + SP L Q P + Sbjct: 130 ELQLSVPLVGLKADDSDIEIRFGIGHYPG-YHVTRILDEDVLPMCSPEYLAQHGPFENYE 188 Query: 185 QIVGHTLLVSRSRRNDWDDWRKLVGLKRWRGQ-AMLHFDHVHFVLQAVVDGLGLALSPVS 243 + TLL R W W + GL WR L F + +QA G G+AL+ Sbjct: 189 DLQRATLL--RCTIEPWHPWFQAAGLD-WREPIGTLQFVDIGSCMQAAAWGHGIALARPK 245 Query: 244 LADNDLRSGRLVCPFPHLRMSLAPYY 269 +A + SGRLV P ++ P Y Sbjct: 246 MAASLTASGRLV---PVFDLAAKPAY 268 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 666,184 Number of extensions: 26190 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 28 Length of query: 298 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 215 Effective length of database: 914,170 Effective search space: 196546550 Effective search space used: 196546550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)