BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1465.p
         (201 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983060|ref|YP_001352661.1| macrophage infectivity potentia...    62   2e-11
gi|152982018|ref|YP_001352663.1| hypothetical protein mma_0973 [...    61   5e-11

>gi|152983060|ref|YP_001352661.1| macrophage infectivity
           potentiator-related protein [Janthinobacterium sp.
           Marseille]
          Length = 180

 Score = 62.0 bits (149), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 10/136 (7%)

Query: 53  LAHQPDILR---QRSAAFNAIMYAPGGLSRA----ERELGSLVVSRINGCVYCASVHAQR 105
           L   P++L    Q   AFNA     G L++A     RE  SLVVS +NGC YC +VH   
Sbjct: 27  LGFTPNMLATFAQSPIAFNAWATFRGSLNKALDMKTREAISLVVSEVNGCNYCLAVHTYA 86

Query: 106 FEQLAKRNDTVRQVFDTPYGAGVDAREQAIAKFSAELTETPGQIGAAQIKALYEVGLSEL 165
              +AK      ++     G   D +  A  +F+ ++ E  GQ+    ++A+ +VG ++ 
Sbjct: 87  -ANMAKL--PADEIILARKGHSSDPKRDAAVQFARKVIENRGQVNDTDVQAVRDVGYTDA 143

Query: 166 EVLDLIHSVAIFAWAN 181
            +++++  VA+F+  N
Sbjct: 144 NIMEIVSMVAMFSLTN 159


>gi|152982018|ref|YP_001352663.1| hypothetical protein mma_0973
           [Janthinobacterium sp. Marseille]
          Length = 181

 Score = 61.2 bits (147), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 7/133 (5%)

Query: 62  QRSAAFNAIMYAPGGLSRA----ERELGSLVVSRINGCVYCASVHAQRFEQLAKRNDTVR 117
           Q   AFNA     G LS+A     R+   L VS +NGC YC +VH+   + +AK      
Sbjct: 39  QSPIAFNAWATLLGSLSKALDVKTRDSIGLAVSEVNGCNYCLTVHSFTAQHMAKL--PAD 96

Query: 118 QVFDTPYGAGVDAREQAIAKFSAELTETPGQIGAAQIKALYEVGLSELEVLDLIHSVAIF 177
           ++     G   D +  A  +F+ ++TE  GQ+  A +K + + G ++  +++++  VA++
Sbjct: 97  EIILARKGRANDPKRDAAVQFARKVTENRGQVNDADLKIVRDAGYTDANIMEIVALVAMY 156

Query: 178 AWANRLMLNLGEP 190
           +  N  + N+ +P
Sbjct: 157 SLTN-FINNVFDP 168


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 461,416
Number of extensions: 16934
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 201
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 122
Effective length of database: 928,958
Effective search space: 113332876
Effective search space used: 113332876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)