BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1462.p (528 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982591|ref|YP_001355212.1| ABC-type transport system, peri... 428 e-121 gi|152982644|ref|YP_001353091.1| ABC-type transport system, peri... 99 7e-22 gi|152982754|ref|YP_001351954.1| ABC-type transport system, peri... 84 2e-17 gi|152981157|ref|YP_001352894.1| ABC transporter, periplasmic su... 65 1e-11 >gi|152982591|ref|YP_001355212.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 522 Score = 428 bits (1101), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/514 (45%), Positives = 318/514 (61%), Gaps = 6/514 (1%) Query: 8 RLLAVALTGAALAVAADAARAQNLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVQND 67 L +AL GA +A A +L IA + +SSLDP N A + + H +D LV D Sbjct: 8 HLSVLALLGA---LAMQPLWAADLKIALSADVSSLDPHYLNIAPNVAFSSHIFDALVNVD 64 Query: 68 YN-KLVPGLAVSWKNIDPKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFA 126 N KLVPGLA SW+ +D TWEFKLR +VK+ DG FTA+DV+FS R + S + Sbjct: 65 ANGKLVPGLATSWRAVDATTWEFKLRHDVKFHDGSKFTAEDVVFSLDRPAKLTNSPGPYT 124 Query: 127 GYLRTVESVTAKDPLTLVIKTNIPNPDLPLNLASVHIVSKHVGEKSSTENYNSGAAVIGT 186 Y + + + DP T+ + T P L L+++++ IVSK EK+STE++NSG A+IGT Sbjct: 125 AYTKQIIAKKIVDPYTVRLSTATPYGPLALDVSAIFIVSKKAAEKASTEDFNSGKALIGT 184 Query: 187 GPYKFVSYTPGDRVVMQRNDDYWGGKALWEKVNYRYINNGAARTAALLSGDVDVIDKVSV 246 GPYKFVS+ GDR+ + RN+ YWGGK+ W+KV++R I N A R AALLSGDVD I+ V Sbjct: 185 GPYKFVSFKRGDRIEVARNEQYWGGKSDWDKVSFRIITNSAPRLAALLSGDVDAIEGVPT 244 Query: 247 SDLAKLKQSPNVKVYPYNGLRVLLIQPSFHEGPSPFITDNNGKPLEKNPLLDVRVRRAMS 306 +DL+KLK + K+ R + + E S ++TD GKPL KNPL D+RVR+A+S Sbjct: 245 ADLSKLKGNAKFKLEQKISWRTIFWEIDQSERSSRYVTDKAGKPLPKNPLRDIRVRQAIS 304 Query: 307 LAINRKALIDRILQGAATEANQWMPADTFGYNPEIKNIPFDAAQAKKLLAEAGFPEGFKL 366 AINR+AL+DR ++G A A+ + GYN +K +D AKKLLAEAG+P GF L Sbjct: 305 KAINRQALVDRTMEGLAVPASNIVAPGLLGYNDALKVEAYDPEGAKKLLAEAGYPNGFVL 364 Query: 367 TIHVPNDRYPQAPETMQAVAQFWTRIGIKTQVEVLPWASYSSRANKNEFAVSVLAWGNGT 426 T+H PNDRY + +Q VAQF RIGI+T+VE LP + Y S+A EF+V++L WG Sbjct: 365 TLHGPNDRYINDAQVVQTVAQFLNRIGIQTKVETLPLSVYFSKARAGEFSVALLGWGTLA 424 Query: 427 GEASYALVNVLGTVDPKKGIGASNWNHYSSPAVDKALADSTAEFDAAKREAILRGAAKTV 486 G+ + L ++GT +P G G NW YS+PA+DK +A S D AKRE + AA Sbjct: 425 GD--FGLRTLVGTSNPDIGWGTWNWGKYSNPALDKLIAASLGSVDQAKREGYAKEAAAVA 482 Query: 487 SDEVGVIPLYHYQNIWAAKKGLKVTPISSDRTTA 520 + V+PL+H WA +KGLK T + + T A Sbjct: 483 MKDYAVVPLHHQYATWAMRKGLKYTARTDEFTFA 516 >gi|152982644|ref|YP_001353091.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 535 Score = 98.6 bits (244), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 139/540 (25%), Positives = 217/540 (40%), Gaps = 82/540 (15%) Query: 6 LTRLLAVALTGAALAVAADAARAQNLNIAFAD-PLSSLDPQLNNHAGDRSVDLH-FWDLL 63 + R L V AL A I+ AD PL++ P + AG H +D L Sbjct: 7 VARWLMVVPVALALHSGVHAETVARYGISMADIPLTTGQP--DRGAGAYQFTGHTIYDPL 64 Query: 64 VQNDYN------KLVPGLAVSWKNIDPK---TWEFKLRPNVKWQDGKPFTADDVIFSYQR 114 + + N KL+PGLA WK +DPK W F LR VK+ DG F AD V+++ + Sbjct: 65 IAWEANIGTRPGKLIPGLATEWK-VDPKDQKKWLFTLRKGVKFHDGSDFKADAVVWNLDK 123 Query: 115 A--RAVPGSVATFAGYLR----TVESVTAKDPLTLVIKTNIPNPDLPLNLASVHIVSKHV 168 P A + +R ++ S + + I T + P L I S Sbjct: 124 VLNDKSPQFDAKQSAQVRPRIPSIVSYRKVNDYAVEITTKEIDALFPYQLPWFLISSPAQ 183 Query: 169 GEKSSTENYNSGAAVIGTGPYKFVSYTPGDRVVMQRNDDYWGGKALWE--KVNYRYINNG 226 EK + + GTGP+K P +R + +N YW L + +V I + Sbjct: 184 WEKVGRDWNKFASQASGTGPFKLDKLVPRERAELVKNAGYWDKSRLAQTDRVILLPIPDA 243 Query: 227 AARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVYPYNGLRVLLIQPSFHEGPSPFITDN 286 R ALL+G VD+I+ L +LK S G + L+ + H P F T Sbjct: 244 LTRANALLNGQVDIIETPPPDVLPQLKSS---------GFK-LVTNVTPHVWPYHFSTQP 293 Query: 287 NGKPLEKNPLLDVRVRRAMSLAINRKALIDRILQGAATEA-------NQWMPADTFGYNP 339 +P D+RVR+A +LA++R ++ ++ G A A + W TF Sbjct: 294 G------SPWTDIRVRKAANLAVDRSGIV-ALMNGLAVPAYGQLDPTSPWFGKPTFKIKY 346 Query: 340 EIKNI----------PFDAAQAKKLLAEAGFPEGFKLTIHVPNDRYPQAPETMQAVAQFW 389 ++ P +AK ++A+ G + L P + Y Q Q++A+ Sbjct: 347 DLAAARALMAQAGYSPSKPLKAKIVIAQGGTGQMLSL----PMNEYIQ-----QSLAE-- 395 Query: 390 TRIGIKTQVEV-------LPWASYSSRANKNEFAVSVLAWGNGTGEASYALVNVLGT--V 440 IGI+ Q EV L W S + ++ + G T + YAL + V Sbjct: 396 --IGIQVQFEVVELETLYLHWRSGAKGDINAGKGITAINLGYVTADPFYALTRFADSRYV 453 Query: 441 DPKKGIGASNWNHYSSPAVDKALADSTAEFDAAKREAILRGAAKTVSDEVGVIPLYHYQN 500 P NW +S+P VD L FD ++ +L + + D+ ++ + H N Sbjct: 454 APN----GVNWGGWSNPKVDAELDQIRTTFDVKAQDKLLAQVHQAMVDDALMLWVVHDVN 509 >gi|152982754|ref|YP_001351954.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 585 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 107/489 (21%), Positives = 197/489 (40%), Gaps = 49/489 (10%) Query: 62 LLVQNDYNKLVPGLAVSWK-NIDPKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPG 120 L+ Q++ + P LA SW+ + D KT+ F LR +V + DG F A+ V + + R Sbjct: 110 LVYQDEQGNISPWLAKSWEISPDGKTYTFHLRDDVTFSDGVRFNAEAVQVNLEHMRDPAT 169 Query: 121 SVATFAGYLRTVESVTAKDPLTLVIKTNIPNPDLPLNLASVHIVSKHVGEKSSTENYNSG 180 A Y+R D T + + P P + K EN S Sbjct: 170 KSPLAAAYIRPYLRGRIVDEYTF--EATLSEPYSPFLDVLAQSWLSMISPKQIRENPKSI 227 Query: 181 AAV-IGTGPYKFVSYTPGDRVVMQRNDDY-WG-------GKALWEKVNYRYINNGAARTA 231 A IG+GP+ SY + DY W G A +++ ++ R + Sbjct: 228 AEHPIGSGPFVLESYVRAQGANFVKRADYNWAPPVVRHKGPAYLDRIELTFVPEAMIRYS 287 Query: 232 ALLSGDVDVIDKVSVSDLAKLKQSPNVKVYPY----NGLRVLLIQPSFHEGPSPFITDNN 287 +L S D + ++ P ++ + N R L + Sbjct: 288 SLQSAQSDFTLDAPAQNAQAIRADPALRFHSRVRKGNPFRSLTLN--------------- 332 Query: 288 GKPLEKNPLLDVRVRRAMSLAINRKALIDRILQGAATEANQWMPADTFGYNPEIKN-IPF 346 +EK P DV++R+A++LAI+R+ + G + ++ A++ Y+P KN + + Sbjct: 333 ---VEKAPFNDVQIRKALALAIDREGVAWITGFGEYEPKSDFLAANSRYYDPSFKNALTY 389 Query: 347 DAAQAKKLLAEAGF----------PEGFKLTIHVPNDRYPQAPETMQAVAQFWTR-IGIK 395 + A+A +L +AG+ +G +L+ V P P ++ Q R +G + Sbjct: 390 NVAEANRLFDQAGWTTRDDKGYRTKDGKRLSATVLITENPAFPNSVAVAIQADARKVGFE 449 Query: 396 TQVEVLPWASYSSRANKNEF-AVSVLAWGNGTGEASYALVNVLGTVDPKKGIGASNWNHY 454 +E+LP A + R ++ A+ W T + Y L + ++ +K IG N + Sbjct: 450 LNIELLPLAVITDRRYVGDYQALGGGYWHTNTPDGLYILYHS-NSIASEKLIG-QNSSRL 507 Query: 455 SSPAVDKALADSTAEFDAAKREAILRGAAKTVSDEVGVIPLYHYQNIWAAKKGLKVTPIS 514 +D L + D + +A+ A + +++ V IP Y ++ A + +K Sbjct: 508 RDAELDDVLERARKSNDPVELKALYSQAQRRLTEVVPAIPSYESIHMIAYRSYVKGVVFD 567 Query: 515 SDRTTAMMV 523 + T + + Sbjct: 568 TSHNTPLFI 576 >gi|152981157|ref|YP_001352894.1| ABC transporter, periplasmic substrate-binding protein [Janthinobacterium sp. Marseille] Length = 606 Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 106/248 (42%), Gaps = 20/248 (8%) Query: 83 DPKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLT 142 D + F+L P ++ +G P A DV +S+ V S L V+ + T Sbjct: 120 DRMSMTFRLNPKARFNNGDPVLASDVKYSFDTL--VAKSAPQVKSLLANVKQCVVLNERT 177 Query: 143 LVIKTNIPNPDLPLNLASVHIVSKHVGEKSSTENYNSGAAVIGTGPYKFVSYTPGDRVVM 202 + N ++PL + SV + S+ + + I TGPY + G + Sbjct: 178 VRFDFKALNREMPLIVGSVPVFSRKWAAGTDFDKIQL-IPPITTGPYLIDRFDTGRSISY 236 Query: 203 QRNDDYWG-------GKALWEKVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLKQS 255 + N DYWG G + ++NYR+ + AR A +G+ D++ + S + A+ + Sbjct: 237 KLNPDYWGRDIPTRKGMYNFGRINYRFYKDDVARLEAFKAGEFDLVVENSAKNWARSYKG 296 Query: 256 PNVKVYPYNGLRVLL-IQPSFHEGPSPFITDNNGKPLEKNPLLDVRVRRAMSLAINRKAL 314 P NG + + S G F+ + L + DVRVR+A+ LA++ + + Sbjct: 297 PKFN----NGTIIKRELAHSNGAGMQGFLMN-----LRRPQFQDVRVRQALGLALDYEWM 347 Query: 315 IDRILQGA 322 ++ G+ Sbjct: 348 NRQLFFGS 355 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,195,806 Number of extensions: 50087 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 4 Length of query: 528 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 440 Effective length of database: 895,685 Effective search space: 394101400 Effective search space used: 394101400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)