BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1461.p (335 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982636|ref|YP_001355208.1| ABC-type transport system, ATPa... 418 e-118 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 277 6e-76 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 209 2e-55 gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC tr... 186 2e-48 gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport... 179 1e-46 >gi|152982636|ref|YP_001355208.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 333 Score = 418 bits (1075), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/328 (63%), Positives = 245/328 (74%), Gaps = 2/328 (0%) Query: 8 LIETRAVSRRFGQRHQGWLERQLQARGWSRPPAITHALDQVDLKVLPGEVVGLVGESGCG 67 L+E R VS+RF + R + G R + HA+D +L + GEVVGLVGESGCG Sbjct: 6 LLELRDVSKRFA-KPLDTAARIAKIFGAQRHEEVVHAVDHANLAIHSGEVVGLVGESGCG 64 Query: 68 KSTLGRVACGLLDPSEGQVLVNGRDRASLTRGEEAQARLQVQMIFQNPYASLNPRLRVDQ 127 KSTLGR+A GL S G G D A LT + + +L +QMIFQ+PYASLNPR+R+ Sbjct: 65 KSTLGRIAVGLHTLSAGTRWWKGADMAQLTTADRRRTQLAMQMIFQDPYASLNPRMRIQD 124 Query: 128 IVGEAAQVNGKVEG-DLDDYVCRQLLRAGLDPALRDRYPHQFSGGQRQRIGIARALAVQP 186 IVGEA +G V+ + DYV L + GLDPAL R+PHQFSGGQR RIGIARALAV+P Sbjct: 125 IVGEAPLAHGMVKAAEQKDYVAALLQKVGLDPALVRRFPHQFSGGQRARIGIARALAVRP 184 Query: 187 QMLVCDEAVAALDVSIQAQILNLFMDLREELGLTYLFISHDLGVVEHVSDRVVIMYLGRV 246 ++LVCDEAVAALDVSIQAQ+LNLF++LR EL LTYLFISHDLGVV HVSDRVVIMYLGR+ Sbjct: 185 ELLVCDEAVAALDVSIQAQVLNLFIELRNELNLTYLFISHDLGVVRHVSDRVVIMYLGRI 244 Query: 247 VESAPVAELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPGGCHFNPRCPH 306 VES+P ELF QPNHPYT ALLA P++ RK +F A+KGEIPSPL+PP GCHF+PRCPH Sbjct: 245 VESSPTIELFAQPNHPYTSALLASAPKLEVRKIDFVAVKGEIPSPLHPPSGCHFHPRCPH 304 Query: 307 ATQRCREEQPLLREIAPGHMSACHLNDG 334 A RC EQPLL+EIAP H SACHLND Sbjct: 305 AMPRCSVEQPLLKEIAPQHFSACHLNDA 332 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 277 bits (709), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 141/314 (44%), Positives = 194/314 (61%), Gaps = 6/314 (1%) Query: 26 LERQLQARG--WSRPPAITHALDQVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSE 83 L++ RG + R HA+D V V G+ +G+VGESGCGKST R+ L+ P Sbjct: 26 LKKYFPVRGELFQRERKFVHAVDGVSFSVAKGKTLGIVGESGCGKSTTARLIARLVTPDS 85 Query: 84 GQVLVNGRDRASLTRGEEAQARLQVQMIFQNPYASLNPRLRVDQIVGEAAQVNGKVEGDL 143 G ++ +G A E + R +QM+FQ+ +ASLNPRL + + V Q +G + Sbjct: 86 GSMIFDGEGVAEFGGIEFKEFRRNLQMVFQDSFASLNPRLTISETVAYGPQAHGVSKAQA 145 Query: 144 DDYVCRQLLRAGLDPA-LRDRYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSI 202 + L R GL P RYPH+ SGGQRQR+ IARALA +P++++ DEAVAALD S+ Sbjct: 146 TERAHALLARVGLQPEQFASRYPHELSGGQRQRVNIARALAFEPRLVILDEAVAALDKSV 205 Query: 203 QAQILNLFMDLREELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHP 262 QAQ+LNL +L+ E LTYLFISHDL VV ++SD V++MY+G+VVE PV +++G HP Sbjct: 206 QAQVLNLLQELKAEHDLTYLFISHDLHVVHYISDEVMVMYMGQVVEMGPVEDIYGNSRHP 265 Query: 263 YTQALLAEVPRMG-ARKKEFTAIKGEIPSPLNPPGGCHFNPRCPHATQRCREEQP--LLR 319 YT+ALL+ VP M A + + T + G+ P+P+NPP GC F RCPHA C + P + Sbjct: 266 YTRALLSAVPSMDPANRTQHTPLSGDPPNPINPPSGCRFRERCPHAEAVCAAQVPALMAA 325 Query: 320 EIAPGHMSACHLND 333 H ACH+ND Sbjct: 326 AGNAAHTVACHMND 339 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 209 bits (531), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 110/237 (46%), Positives = 160/237 (67%), Gaps = 1/237 (0%) Query: 44 ALDQVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSEGQVLVNGRDRASLTRGEEAQ 103 A+ +V + GE VG+VGESG GK+TL R+ GL P+ G V + + + L+ ++ Sbjct: 322 AVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLETPNVGNVRLRDQVWSDLSDAQQRA 381 Query: 104 ARLQVQMIFQNPYASLNPRLRVDQIVGEAAQVNGKVEGDLDDYVCRQLLR-AGLDPALRD 162 R ++Q++FQ+P AS +PR V++++ EA V G + + +LL LD + Sbjct: 382 ERKRIQVVFQDPLASFDPRYTVERVLFEALGVAGYTDTEKTRARAIELLHLVRLDQSYLQ 441 Query: 163 RYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLREELGLTYL 222 R P + SGGQRQRI IARALA +P++L+CDE V+ALDVS+QAQIL+L +DL++ LGL+ L Sbjct: 442 RRPIELSGGQRQRIAIARALAPEPEVLICDEPVSALDVSVQAQILDLLIDLKDRLGLSCL 501 Query: 223 FISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAEVPRMGARKK 279 FISHDLGV+ VSDR+++M G VVES V E+F P H YTQ LL+ +P++G +K+ Sbjct: 502 FISHDLGVIYRVSDRILVMKDGIVVESGGVREVFENPQHIYTQTLLSAIPQLGIKKR 558 Score = 129 bits (323), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 105/316 (33%), Positives = 148/316 (46%), Gaps = 36/316 (11%) Query: 2 DKAVIPLIETRAVSRRFGQRHQGWLERQLQARGWSRPPAITHALDQVDLKVLPGEVVGLV 61 D+A PL+E + RFG H G PA+ + + GE + LV Sbjct: 6 DQARRPLVEVENLHVRFG--HGG--------------PAVIKG---ISFALHRGECLALV 46 Query: 62 GESGCGKSTLGRVACGLL-DPSEGQVLVNGRDRASLTRGEEAQAR----LQVQMIFQNPY 116 GESG GKS R GL S Q D L R E R ++ + Q+ Sbjct: 47 GESGSGKSVTSRTLVGLTGHRSSLQADRLSFDGDDLRRFNERTWRDIRGRRIGFVMQDAL 106 Query: 117 ASLNPRLRVDQIVGEAAQVNGKVEGDLDDYVCRQLLRAGLDPALRDR---YPHQFSGGQR 173 SL+P V V E +++ K+ + LL + P R YPHQ SGG R Sbjct: 107 GSLDPLRTVGAEVAEPLKLHAKLTKQEREEKVIALLHSVGIPQPESRLMQYPHQLSGGLR 166 Query: 174 QRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLREELGLTYLFISHDLGVVEH 233 QR IA A+A P++L+ DE ALD ++QAQ+L+L LR L +SHD VV Sbjct: 167 QRALIASAIACNPELLIADEPTTALDAAVQAQVLDLLESLRTP-DKAMLVVSHDFAVVSR 225 Query: 234 VSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAEVPRMGARK--KEFTAIK-----G 286 ++DRV +M+ G +VE P+ + P HPYT++LL+ V + R ++ A+ Sbjct: 226 LADRVAVMWHGEIVEQGPLDAILHDPQHPYTKSLLSAVSSVQKRGPVRQKIAVTEDGHLA 285 Query: 287 EIPSPLNPPGGCHFNP 302 +PS L PPG + NP Sbjct: 286 TLPSEL-PPGVINNNP 300 >gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 459 Score = 186 bits (472), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 158/292 (54%), Gaps = 10/292 (3%) Query: 35 WSRPPAITHALDQVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSEGQVL---VNGR 91 +S + A++ V V PG ++GLVGESG GKS GL+D + G+++ + + Sbjct: 146 FSAREGVVKAVEDVSFSVGPGRIMGLVGESGSGKSMTAYSIMGLID-APGKIVGGKILLQ 204 Query: 92 DRASLTRGEEAQARLQ---VQMIFQNPYASLNPRLRVDQIVGEAAQVNGKVEGDLDDYVC 148 ++ L EA R++ V MIFQ+P +LNP LR+D + EA + V + Sbjct: 205 EQDLLDLSPEAMRRIRGNRVAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVSKATARAMA 264 Query: 149 RQLL-RAGL-DPALR-DRYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQ 205 R L R G+ P R YPHQFSGG RQR+ IA AL +P +++CDE ALDV+IQ Q Sbjct: 265 RDALARVGIASPDERLQAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALDVTIQGQ 324 Query: 206 ILNLFMDLREELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQ 265 IL L E G ++I+HDL V+ ++D + +MY G++VES V ++ Q HPYT Sbjct: 325 ILYEMQKLCRESGTALIWITHDLSVIAGLADDLCVMYAGKIVESGTVQQVLEQTRHPYTY 384 Query: 266 ALLAEVPRMGARKKEFTAIKGEIPSPLNPPGGCHFNPRCPHATQRCREEQPL 317 L+A P + I G PS LN P GC F RC AT C PL Sbjct: 385 GLIASSPSRNIAGQPLRQIPGMTPSLLNLPSGCAFRTRCERATAECANTPPL 436 >gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 332 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 108/282 (38%), Positives = 153/282 (54%), Gaps = 8/282 (2%) Query: 43 HALDQVDLKVLPGEVVGLVGESGCGKS----TLGRVACGLLDPSEGQVLVNGRDRASLTR 98 HALD++ + GEV+GL+GESG GKS TL R+ G + V+G D +L Sbjct: 22 HALDKISFDLQAGEVLGLLGESGSGKSVTLRTLLRLHPQRTTRISGSMEVDGMDVLALKG 81 Query: 99 GE-EAQARLQVQMIFQNPYASLNPRLRVDQIVGEAAQVNGKVEGDLDDYVCRQLLRAGLD 157 E EA M+FQ P + +P + Q + EA + + ++ Q+L Sbjct: 82 CELEAYRGGTASMVFQEPGLAFDPVYTIGQQITEAIRAHEALDHRSAMQRALQMLERVQI 141 Query: 158 PALR---DRYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLR 214 P R D YPH+ SGG RQR IA ALA +P++L+ DE ALD ++Q QIL L +L+ Sbjct: 142 PQARRRYDAYPHELSGGMRQRAMIALALACKPRLLLADEPTTALDATVQIQILLLLRELQ 201 Query: 215 EELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAEVPRM 274 +E G++ +F++HD+G V+D++ +MY GR+VE VA + P HPYT LLA Sbjct: 202 KETGMSVIFVTHDIGAAVEVADKIAVMYGGRIVEENSVAGIVHNPRHPYTAGLLASTVST 261 Query: 275 GARKKEFTAIKGEIPSPLNPPGGCHFNPRCPHATQRCREEQP 316 R K A+ G P P GC F PRC +A Q+C E+P Sbjct: 262 ENRGKPLLAVPGSPPDLSALPLGCSFAPRCSNARQQCTSEKP 303 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 770,325 Number of extensions: 30424 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 58 Length of query: 335 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 251 Effective length of database: 910,473 Effective search space: 228528723 Effective search space used: 228528723 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)