BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1460.p (327 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC tr... 407 e-115 gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport... 227 7e-61 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 209 2e-55 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 202 2e-53 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 189 2e-49 >gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 459 Score = 407 bits (1045), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/316 (64%), Positives = 250/316 (79%), Gaps = 1/316 (0%) Query: 5 TLDVRHLRTHFFTPDGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGR 64 TL V++L+ HF +GV+ AV+DVS SVG GRI+GLVGESGSGKS+T +SI+G++DAPG+ Sbjct: 136 TLTVQNLQMHFSAREGVVKAVEDVSFSVGPGRIMGLVGESGSGKSMTAYSIMGLIDAPGK 195 Query: 65 IVGGEILFQGRDLVRMDKASLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKV 124 IVGG+IL Q +DL+ + ++R ++GNR+AMIFQDPMMTLNPVL+++ QM++AVLAH V Sbjct: 196 IVGGKILLQEQDLLDLSPEAMRRIRGNRVAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDV 255 Query: 125 SRQQARELARQTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTT 184 S+ AR +AR L +GIASP+ERLQAYPHQ SGGMRQRVAIAIA+L+KPDLII DEPTT Sbjct: 256 SKATARAMARDALARVGIASPDERLQAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTT 315 Query: 185 ALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVL 244 ALDVTIQ QIL E+QKL R+ GTALIWITHDLSV+AGLAD++ VMYAG+IVE G+V VL Sbjct: 316 ALDVTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADDLCVMYAGKIVESGTVQQVL 375 Query: 245 DSPLHPYTQGLIGSLPSNNRRATRLRQIPGMTPNLLHLPPTCAFAARCERLSQHCLTAPA 304 + HPYT GLI S PS N LRQIPGMTP+LL+LP CAF RCER + C P Sbjct: 376 EQTRHPYTYGLIASSPSRNIAGQPLRQIPGMTPSLLNLPSGCAFRTRCERATAECANTPP 435 Query: 305 ISEPRPAHLVRCYHPI 320 +S H RC+HP+ Sbjct: 436 LS-IHGTHTWRCFHPV 450 >gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 332 Score = 227 bits (579), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 117/298 (39%), Positives = 176/298 (59%) Query: 24 AVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQGRDLVRMDKA 83 A+D +S + G +LGL+GESGSGKSVT ++L + + G + G D++ + Sbjct: 23 ALDKISFDLQAGEVLGLLGESGSGKSVTLRTLLRLHPQRTTRISGSMEVDGMDVLALKGC 82 Query: 84 SLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVSRQQARELARQTLGMMGIA 143 L +G +M+FQ+P + +PV + Q+ +A+ AH + + A + A Q L + I Sbjct: 83 ELEAYRGGTASMVFQEPGLAFDPVYTIGQQITEAIRAHEALDHRSAMQRALQMLERVQIP 142 Query: 144 SPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQAQILSEVQKLAR 203 R AYPH+LSGGMRQR IA+A+ KP L++ADEPTTALD T+Q QIL +++L + Sbjct: 143 QARRRYDAYPHELSGGMRQRAMIALALACKPRLLLADEPTTALDATVQIQILLLLRELQK 202 Query: 204 QHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDSPLHPYTQGLIGSLPSNN 263 + G ++I++THD+ +AD++AVMY GRIVE+ SV ++ +P HPYT GL+ S S Sbjct: 203 ETGMSVIFVTHDIGAAVEVADKIAVMYGGRIVEENSVAGIVHNPRHPYTAGLLASTVSTE 262 Query: 264 RRATRLRQIPGMTPNLLHLPPTCAFAARCERLSQHCLTAPAISEPRPAHLVRCYHPIS 321 R L +PG P+L LP C+FA RC Q C + + C++P+S Sbjct: 263 NRGKPLLAVPGSPPDLSALPLGCSFAPRCSNARQQCTSEKPQVISLNGERLACWNPVS 320 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 209 bits (533), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/258 (43%), Positives = 164/258 (63%), Gaps = 8/258 (3%) Query: 4 TTLDVRHLRTHFFTPDGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGM-VDAP 62 + LD+++L+ F T V+DVS S+ G LVGESGSGK+VT S+L + DA Sbjct: 2 SLLDIQNLQVSFDTSK----VVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRLNQDA- 56 Query: 63 GRIVGGEILFQGRDLVRMDKASLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHS 122 GG+ILF+G+D+++ +A++R ++GN +AMIFQ+PM LNP+ + Q+ + ++ H Sbjct: 57 --TYGGKILFEGQDILQKTEAAMRSVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMLHE 114 Query: 123 KVSRQQARELARQTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEP 182 +S + A + L GI P+ R +YPH+LSGG RQR IA+A+ KP L+IADEP Sbjct: 115 GISARAAALRTVELLDKTGIPEPQRRALSYPHELSGGQRQRAMIAMALACKPKLLIADEP 174 Query: 183 TTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDA 242 TTALDVTIQ QI+ + +L R+ A++ ITHDL++V AD V VM GR++E + Sbjct: 175 TTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGRLLEVATTQQ 234 Query: 243 VLDSPLHPYTQGLIGSLP 260 + +P YT+ L+ S P Sbjct: 235 LFSAPREAYTKKLLASQP 252 Score = 162 bits (410), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 93/225 (41%), Positives = 140/225 (62%), Gaps = 7/225 (3%) Query: 35 GRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQGRDLVRMDKASLRELQGNRIA 94 G LG+VGESGSGKS G ++L + G V GEI F G+ + + +LR L+ R+ Sbjct: 301 GETLGIVGESGSGKSTLGLALLRL---SGAHVKGEIAFDGQAITHQSRDALRPLRA-RMQ 356 Query: 95 MIFQDPMMTLNPVLKVEAQMVDAVLAHS-KVSRQQARELARQTLGMMGIASPEERLQAYP 153 ++FQDP +L+P VE + + + H ++ R+ L +G+++ E + YP Sbjct: 357 IVFQDPFASLSPRRTVEQIVGEGLALHQPQLGPHGIRKAVADGLQEVGLSA--EMMTRYP 414 Query: 154 HQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQAQILSEVQKLARQHGTALIWIT 213 H+ SGG RQR+AIA A++ KPDLI+ DEPT++LDV++Q Q+L + L +++G A I+I+ Sbjct: 415 HEFSGGQRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLLLLADLQKKYGMAYIFIS 474 Query: 214 HDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDSPLHPYTQGLIGS 258 HDL+V+ +A V VM GR+VEQG VL P PYTQ L+ + Sbjct: 475 HDLAVIRAMAHRVMVMKDGRVVEQGLTQTVLSKPSEPYTQRLLAA 519 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 107/245 (43%), Positives = 159/245 (64%), Gaps = 2/245 (0%) Query: 23 PAV-DDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQGRDLVRMD 81 PAV +S ++ RG L LVGESGSGKSVT +++G+ + + F G DL R + Sbjct: 27 PAVIKGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSSLQADRLSFDGDDLRRFN 86 Query: 82 KASLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVSRQQARELARQTLGMMG 141 + + R+++G RI + QD + +L+P+ V A++ + + H+K+++Q+ E L +G Sbjct: 87 ERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAKLTKQEREEKVIALLHSVG 146 Query: 142 IASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQAQILSEVQKL 201 I PE RL YPHQLSGG+RQR IA A+ P+L+IADEPTTALD +QAQ+L ++ L Sbjct: 147 IPQPESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEPTTALDAAVQAQVLDLLESL 206 Query: 202 ARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDSPLHPYTQGLIGSLPS 261 R A++ ++HD +VV+ LAD VAVM+ G IVEQG +DA+L P HPYT+ L+ ++ S Sbjct: 207 -RTPDKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDAILHDPQHPYTKSLLSAVSS 265 Query: 262 NNRRA 266 +R Sbjct: 266 VQKRG 270 Score = 150 bits (379), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 153/257 (59%), Gaps = 10/257 (3%) Query: 6 LDVRHLRTHFFTPDGVLP-AVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGR 64 ++V +L FF PDG AV +VS ++ +G +G+VGESGSGK+ +LG+ + P Sbjct: 303 VEVNNLTKVFFGPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGL-ETPN- 360 Query: 65 IVGGEILFQGRDLVRMDKASLRE-LQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSK 123 VG L RD V D + ++ + RI ++FQDP+ + +P VE + +A+ Sbjct: 361 -VGNVRL---RDQVWSDLSDAQQRAERKRIQVVFQDPLASFDPRYTVERVLFEALGVAGY 416 Query: 124 VSRQQARELARQTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPT 183 ++ R A + L ++ + + LQ P +LSGG RQR+AIA A+ +P+++I DEP Sbjct: 417 TDTEKTRARAIELLHLVRL--DQSYLQRRPIELSGGQRQRIAIARALAPEPEVLICDEPV 474 Query: 184 TALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAV 243 +ALDV++QAQIL + L + G + ++I+HDL V+ ++D + VM G +VE G V V Sbjct: 475 SALDVSVQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESGGVREV 534 Query: 244 LDSPLHPYTQGLIGSLP 260 ++P H YTQ L+ ++P Sbjct: 535 FENPQHIYTQTLLSAIP 551 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 189 bits (480), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 111/278 (39%), Positives = 158/278 (56%), Gaps = 10/278 (3%) Query: 24 AVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQGRDLVRMDKA 83 AVD VS SV +G+ LG+VGESG GKS T I +V G ++F G + Sbjct: 46 AVDGVSFSVAKGKTLGIVGESGCGKSTTARLIARLVTPDS----GSMIFDGEGVAEFGGI 101 Query: 84 SLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVSRQQARELARQTLGMMGIA 143 +E + N + M+FQD +LNP L + + AH VS+ QA E A L +G+ Sbjct: 102 EFKEFRRN-LQMVFQDSFASLNPRLTISETVAYGPQAHG-VSKAQATERAHALLARVGL- 158 Query: 144 SPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQAQILSEVQKLAR 203 PE+ YPH+LSGG RQRV IA A+ +P L+I DE ALD ++QAQ+L+ +Q+L Sbjct: 159 QPEQFASRYPHELSGGQRQRVNIARALAFEPRLVILDEAVAALDKSVQAQVLNLLQELKA 218 Query: 204 QHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDSPLHPYTQGLIGSLPSNN 263 +H ++I+HDL VV ++DEV VMY G++VE G V+ + + HPYT+ L+ ++PS + Sbjct: 219 EHDLTYLFISHDLHVVHYISDEVMVMYMGQVVEMGPVEDIYGNSRHPYTRALLSAVPSMD 278 Query: 264 RRATRLRQIP--GMTPNLLHLPPTCAFAARCERLSQHC 299 A R + P G PN ++ P C F RC C Sbjct: 279 -PANRTQHTPLSGDPPNPINPPSGCRFRERCPHAEAVC 315 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 796,447 Number of extensions: 34417 Number of successful extensions: 276 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 59 Length of query: 327 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 243 Effective length of database: 910,473 Effective search space: 221244939 Effective search space used: 221244939 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)