BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1459.p (320 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide... 360 e-101 gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport... 162 2e-41 gi|152981314|ref|YP_001351949.1| ABC-type transport systems, per... 145 2e-36 gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transp... 118 4e-28 >gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Janthinobacterium sp. Marseille] Length = 301 Score = 360 bits (924), Expect = e-101, Method: Compositional matrix adjust. Identities = 180/293 (61%), Positives = 232/293 (79%) Query: 27 PPRRESPWRRVMRHFVASRSAMLGLVIVLLLIVGAVAAPWITPQNPYDLMQLDVLDARLH 86 P E+P+RR R+F AS+ A LG +I+LL+++ AV AP I PQNPYDL Q+D++D+RL Sbjct: 7 PISIETPFRRFSRNFFASKVATLGFIILLLIVLAAVFAPVIAPQNPYDLAQIDIMDSRLE 66 Query: 87 PGTINGAGTYTYWLGTDGQGRDLVSAILYGLRISVGIGVGSALIAGVIGTLIGLLAAYVG 146 PG N + TY LGTD QGRD++SAILYG+RIS+ +GV S IA +IG +GL A Y G Sbjct: 67 PGKQNIDHSLTYVLGTDEQGRDMLSAILYGVRISIIVGVVSTAIALLIGLTLGLFAGYFG 126 Query: 147 GKLDTLLMRFADLVLSFPSILVAMLILAYVGKGIFNVMATLVVLEWAYYARTARGQALVE 206 G++++L+MR AD+ LSFP ILVA+++LA +G GI ++ LV ++WAYYARTAR ALVE Sbjct: 127 GRIESLIMRIADIQLSFPPILVALILLALMGPGIGKIIIALVAVQWAYYARTARSAALVE 186 Query: 207 RRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIVIGTLQVARAITLEATLSFLGLGVPIT 266 R+KEY+EAA GL LS R + H+LPNCLPPLIVI LQVA AI+LEATLSFLG+G+P+T Sbjct: 187 RKKEYIEAATGLGLSPLRTVFHHLLPNCLPPLIVIAALQVASAISLEATLSFLGIGLPVT 246 Query: 267 EPSLGLLISNGYQYMLSGEYWISFYPGITLLIVIVAINLVGDRLRDILNPRWQ 319 EPSLGLLI+NG+ YM+SG+YWIS +PGI LL+ +VAINLV D+LRD+LNPR Q Sbjct: 247 EPSLGLLIANGFDYMMSGKYWISLFPGIALLLTVVAINLVADQLRDVLNPRLQ 299 >gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 298 Score = 162 bits (410), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 160/284 (56%), Gaps = 10/284 (3%) Query: 34 WRRVMRHFVASRSAMLGLVIVLLLIVGAVAAPWITPQNPYDLMQLDVLDARLHPGTINGA 93 W +V+R + AM ++V L++ AV APW+ P +PY + RL P Sbjct: 24 WSKVLRQLMRDPVAMGAALVVFLIVCAAVFAPWLAPMDPYK----GSMIKRLLP-----I 74 Query: 94 GTYTYWLGTDGQGRDLVSAILYGLRISVGIGVGSALIAGVIGTLIGLLAAYVGGKLDTLL 153 G+ Y LGTD GRD++S ++YG R+S+ +GV L A IGT IGLLA YVGG+L+ ++ Sbjct: 75 GSEGYLLGTDELGRDMLSRLMYGGRLSLLMGVTPVLAAFGIGTSIGLLAGYVGGRLNMII 134 Query: 154 MRFADLVLSFPSILVAMLILAYVGKGIFNVMATLVVLEWAYYARTARGQALVERRKEYVE 213 MR D+ +FPS+L+A+ I +G G+ N + L ++ R A R+ +Y+E Sbjct: 135 MRVLDVFYAFPSVLLAVAISGALGPGMTNSILALTLVFVPQVVRVAESVTTQVRKLDYIE 194 Query: 214 AARGLNLSSWRIMVRHILPNCLPPLIVIGTLQVARAITLEATLSFLGLGVPITEPSLGLL 273 AAR S++ I+ H+L N L P+ V T ++ ++ L A LSFLGLGV EP GL+ Sbjct: 195 AARMSGASAFSIIRVHVLGNVLGPVFVYATGLLSVSMILAAGLSFLGLGVKPPEPEWGLM 254 Query: 274 ISNGYQYMLSGEYWISFYPGITLLIVIVAINLVGDRLRDILNPR 317 + N + + W++ PG+ + I + NL+ D +R ++ R Sbjct: 255 L-NTLRSAIFRNPWVAALPGLLIFITSIGFNLLADGVRSAMDIR 297 >gi|152981314|ref|YP_001351949.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 303 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 148/283 (52%), Gaps = 17/283 (6%) Query: 28 PRRESPWRRVMRHFVASRSAMLGLVIVLLLIVGAVAAPWITPQNPYDLMQLDVLDARLHP 87 P R + WR++ V L + VL LIV + +T +P + A Sbjct: 29 PLRLADWRKLRPGLV------LAALFVLFLIVATLQPSLLTSNDPLAASAREAFRAP--- 79 Query: 88 GTINGAGTYTYWLGTDGQGRDLVSAILYGLRISVGIGVGSALIAGVIGTLIGLLAAYVGG 147 + +WLGTD GRD+ + ++YG++ S+ +G+ + I IG +GL A Sbjct: 80 -------SAAHWLGTDENGRDVWTRLIYGVQPSLLMGLAATAIGLSIGIAVGLFAGLGHR 132 Query: 148 KLDTLLMRFADLVLSFPSILVAMLILAYVGKGIFNVMATLVVLEWAYYARTARGQALVER 207 +D LMR D++L+FP +L+A++I+ + G+G+ N + + V YAR R Q + R Sbjct: 133 IIDNFLMRLIDVLLAFPDLLLALVIITFWGQGLVNAVIAVGVASVPRYARMVRAQTHIVR 192 Query: 208 RKEYVEAARGLNLSSWRIMVRHILPNCLPPLIVIGTLQVARAITLEATLSFLGLGVPITE 267 +YVEAA L L +++RH+LPN + P++++ T+ + I A LSFLG G P Sbjct: 193 NAQYVEAAVTLGLRRSTVIIRHVLPNAIKPILILATIGIGGKIAAGAALSFLGFGAPPPS 252 Query: 268 PSLGLLISNGYQYMLSGEYWISFYPGITLLIVIVAINLVGDRL 310 P G ++S G + LS +W+ PG+ + + +V+I +G L Sbjct: 253 PEWGSMLSVGRNF-LSNAWWLVAAPGVAVTLTVVSITALGREL 294 >gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 347 Score = 118 bits (296), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 6/251 (2%) Query: 67 ITPQNPYDLMQLDVLDARLHPGTINGAGTYTYWLGTDGQGRDLVSAILYGLRISVGIGVG 126 I P N Y L+ +P + WLGTD +GRD+V+ +LYG R+SV G+ Sbjct: 100 IYPLNHYHYDTLNYFATSPNPAPPSAEN----WLGTDDRGRDVVARLLYGFRVSVLFGLA 155 Query: 127 SALIAGVIGTLIGLLAAYVGGKLDTLLMRFADLVLSFPSILVAMLILAYVGKGIFNVMAT 186 ++G + G + Y GK D RF ++ + P + + ++ + I ++ Sbjct: 156 LTFTGVLLGLITGAIQGYFAGKTDLFFQRFMEIWGAMPELYLLIIFASIFQPSIGLLLIL 215 Query: 187 LVVLEWAYYARTARGQALVERRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIVIGTLQV 246 L + W + R L R EYV+AAR L LS+ +I+ RH+LPN L P++ ++ Sbjct: 216 LSLFGWMSLSDYVRADFLRNRNLEYVQAARALGLSNGQIIWRHVLPNSLTPVVTFLPFRM 275 Query: 247 ARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGITLLIVIVAINLV 306 + AI +L FLGLGVP + SLG L++ G + +WI+ + L ++++ + + Sbjct: 276 SGAILALTSLDFLGLGVPPSTASLGELLAQGKNNL--DAWWIALSTFVVLTVMLLLLTNI 333 Query: 307 GDRLRDILNPR 317 GD LR+ L+ R Sbjct: 334 GDALRNSLDVR 344 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.142 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 743,007 Number of extensions: 31329 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 4 Length of query: 320 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 237 Effective length of database: 914,170 Effective search space: 216658290 Effective search space used: 216658290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)