BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1456.p (312 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 62 4e-11 gi|152981632|ref|YP_001352505.1| cys regulon transcriptional act... 61 9e-11 gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-... 58 7e-10 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 57 1e-09 gi|152982816|ref|YP_001352236.1| LysR family transcriptional reg... 57 2e-09 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 62.0 bits (149), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 5/223 (2%) Query: 1 MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGELESELGYALFDRNGPRVTPTAK 60 M L +L+ AV A + +QP +S AI +LE ELG LF+R G ++ T Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 61 AFLLYEEVERSLVGLRSIRERALEIAREEVHPVHLVATPALASTIAPAALQLLACEKDRA 120 + + ER L +I+E A + V P L + TIAP L L Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRL----GIIYTIAPYLLPPLVKTIIER 132 Query: 121 FPEH-IHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLELHWIGEAPCVAVVRADHPLA 179 P+ + L+ +++ + + + +LP +GL + + + P V V H A Sbjct: 133 VPQMPLVLQENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHHKWA 192 Query: 180 GRDKLTRAALRGQRVITMSNRYRLRQRVETALGEDSRLDVAID 222 RD ++ L+ + ++ + N + R +V E SR + D Sbjct: 193 NRDSVSTDDLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGD 235 >gi|152981632|ref|YP_001352505.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 308 Score = 60.8 bits (146), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 19/252 (7%) Query: 1 MDLNQLEAFAAVMTLG-SVTGAGRSLGRSQPAVSKAIGELESELGYALFDRNGPRVTP-T 58 M+ QL + G ++T L SQP VS+ I ELE ELG +F+RNG R+T T Sbjct: 1 MNFQQLRSIRETARCGYNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 59 AKAFLLYEEVERSLVGLRSIRERALEIAREEVHPVHLVATPALASTIAPAALQLLACEKD 118 + + ++R L+ +++ + E A +E+ + + T A + P +Q+ E Sbjct: 61 DPGRGILQIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPKVVQVFRKE-- 118 Query: 119 RAFPE-HIHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGL-ELHWIGEAPCV-----AV 171 FP+ I L+ ++ E + VL +G +A GL + + PC V Sbjct: 119 --FPKVRIALQQSTPEHIAEWVLSGKADIG-----IATEGLSQFEDLVSFPCYRWHHSVV 171 Query: 172 VRADHPLAGRDKLTRAALRGQRVITMSNRYRLRQRVETALGE-DSRLDVAIDTNTSFNAI 230 V HPL + +T A L +IT + R ++ A + D D+ + S Sbjct: 172 VPDGHPLLEKKLITLADLAQYSLITYDLGFTGRGHIDEAFKQADITTDIVLTAMDSDVIQ 231 Query: 231 MAARAGLGVALV 242 LGV +V Sbjct: 232 QYVLLNLGVGIV 243 >gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-like protein [Janthinobacterium sp. Marseille] Length = 313 Score = 58.2 bits (139), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 20/221 (9%) Query: 1 MDLNQLEAF-AAVMTLGSVTGAGRSLGRSQPAVSKAIGELESELGYALFDRNGPRV---T 56 M+L+QL AV ++T A ++L SQP VSKAI ELE ELG +F R+G R+ T Sbjct: 1 MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60 Query: 57 PTAKAFLLYEEVERSLVGLRSIRERALEIAREEVHPVHLVATPALASTIAPAALQLLACE 116 +A L + VE + + ++ E A + + T A P +Q Sbjct: 61 EPGRAVL--KSVELIMQEIDGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFT-- 116 Query: 117 KDRAFPE-HIHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLELHWIGEAPCV-----A 170 + FP+ + L + +QV VL L + + +A + + PC Sbjct: 117 --QKFPKVRLSLLQGNPKQVADMVLMDQADLAIATESIA----SIEGLISLPCYQWEHQV 170 Query: 171 VVRADHPLAGRDKLTRAALRGQRVITMSNRYRLRQRVETAL 211 VV DHPL +T L +IT + + R +++ A Sbjct: 171 VVPVDHPLLKSKSITLEELTAYPLITYDSAFAGRNKIDHAF 211 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 11/215 (5%) Query: 1 MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGELESELGYALFDRNGPRVTPTAK 60 M+L L F A S T A SL +QP +S I ++E ELG LFDR G V T Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 AFLLYEEVERSLVGLRSIRERALEIAREEVHPVHLVATPALASTIAPAALQLLACEKDRA 120 L +R+L+ + + L+ E + H T + S+ L + + ++ Sbjct: 61 GELFQVYAKRALLEV----DAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKV 116 Query: 121 FP----EHIHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLELHWIGEAPCVAVVRADH 176 +P + LRS E+ +L + G+ P + + + + P VV H Sbjct: 117 YPGIKITVLRLRSGEIEE---RLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHH 173 Query: 177 PLAGRDKLTRAALRGQRVITMSNRYRLRQRVETAL 211 PL G +T L ++ +S+ Y R+ ++ L Sbjct: 174 PLVGSAGITLNELNEHELVMLSDEYNSRKMMDAIL 208 >gi|152982816|ref|YP_001352236.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 18/185 (9%) Query: 3 LNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGELESELGYALFDRN--GPRVTPTAK 60 L+QL F AV+ GS + A R L R+Q VS I LE++L LFDR+ P +T K Sbjct: 9 LDQLRVFVAVIDCGSFSRAARELHRTQSVVSYTIANLEAQLNVELFDRSKRKPTLTEAGK 68 Query: 61 AFLLYEEVERSLVGLR--SIRERALEIAREEVHPVHLVATPALASTIAPAALQLLACEK- 117 A L + VG++ ++R RA +A+ L A +LA + +L+ K Sbjct: 69 ALL----ADARTVGMKVDAMRARAKTLAQ------GLEAEVSLAVDVMFPNCRLVQALKA 118 Query: 118 -DRAFPE-HIHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLELH-WIGEAPCVAVVRA 174 + FP + LR + V+H V R +G+T + H +G V V Sbjct: 119 FQQEFPTVGLRLRIEALGAVMHLVGERVCQIGITGPMLDFSDTFQHQQLGHITMVPVASP 178 Query: 175 DHPLA 179 DHPL Sbjct: 179 DHPLG 183 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 685,492 Number of extensions: 27218 Number of successful extensions: 139 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 10 Length of query: 312 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 229 Effective length of database: 914,170 Effective search space: 209344930 Effective search space used: 209344930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)