BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1454.p (336 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 180 1e-46 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 157 7e-40 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 155 4e-39 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 148 4e-37 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 148 6e-37 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 180 bits (457), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 100/234 (42%), Positives = 141/234 (60%), Gaps = 8/234 (3%) Query: 1 VIRIEQLHKTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +I I+ + K+Y + Q L+ I +D+ GE+ IIG+SG+GKSTL+R +N LE D G Sbjct: 3 LIAIDNVKKSYGSNQ----VLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEG 58 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDW-PLKITGRYSRQQRA 119 + + G + G L LR +VGMIFQ FNL +V +NI P+ + G + RA Sbjct: 59 SISVAGSHL-GKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARA 117 Query: 120 ARVTELLQLVGLEQHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQA 179 + L + VGL + D +P QLSGGQ+QRV IARAL+ P+ LLCDE TSALDPE Sbjct: 118 LAMKNL-EKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNE 176 Query: 180 ILRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRP 233 +L ++ + + G+T++++THEM R +CDRV + G V E G DIF P Sbjct: 177 VLNVVRGLAHE-GMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANP 229 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 157 bits (398), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 137/231 (59%), Gaps = 10/231 (4%) Query: 17 DIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGEDITGLGHEA 76 + +AL +++LD GE+ ++G SG GK+TL+R + LE+PD G+VL+DGED + Sbjct: 14 NFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARH--- 70 Query: 77 LLGLRQR-VGMIFQHFNLLNAKTVAQNIDWPLKI---TGRYSRQQRAARVTELLQLVGLE 132 +R+R VG +FQH+ L TV +NI + L++ R S Q +VT+LL+LV L+ Sbjct: 71 ---VRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKLLELVQLD 127 Query: 133 QHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQAILRLLLDINRKLG 192 D+YP QLSGGQ+QR+ +ARALA PR+LL DE ALD + + + R L ++ L Sbjct: 128 WLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDDLH 187 Query: 193 LTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHAVTRSLLA 243 +T + +TH+ E + D++ ++ G+V + G D++ P L Sbjct: 188 VTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFLG 238 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 155 bits (391), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 136/237 (57%), Gaps = 5/237 (2%) Query: 20 ALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGEDITGLGHEALLG 79 A+ ++ +A+G+ GI+G SG GKST R + L PDSG ++ DGE + G Sbjct: 46 AVDGVSFSVAKGKTLGIVGESGCGKSTTARLIARLVTPDSGSMIFDGEGVAEFGGIEFKE 105 Query: 80 LRQRVGMIFQ-HFNLLNAK-TVAQNIDWPLKITGRYSRQQRAARVTELLQLVGL--EQHR 135 R+ + M+FQ F LN + T+++ + + + G S+ Q R LL VGL EQ Sbjct: 106 FRRNLQMVFQDSFASLNPRLTISETVAYGPQAHG-VSKAQATERAHALLARVGLQPEQFA 164 Query: 136 DQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQAILRLLLDINRKLGLTI 195 +YP +LSGGQ+QRV IARALA PRL++ DEA +ALD +L LL ++ + LT Sbjct: 165 SRYPHELSGGQRQRVNIARALAFEPRLVILDEAVAALDKSVQAQVLNLLQELKAEHDLTY 224 Query: 196 VLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHAVTRSLLAESHAWDASD 252 + I+H++ V+ I D V V+ G V E G V DI+ +H TR+LL+ + D ++ Sbjct: 225 LFISHDLHVVHYISDEVMVMYMGQVVEMGPVEDIYGNSRHPYTRALLSAVPSMDPAN 281 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 148 bits (374), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 144/248 (58%), Gaps = 6/248 (2%) Query: 1 VIRIEQLHKTYHA--GQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPD 58 V+ + L K + G R + A+ +++ + +GE GI+G SG+GK+TL R + LE P+ Sbjct: 302 VVEVNNLTKVFFGPDGSRRV-AVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLETPN 360 Query: 59 SGRVLIDGEDITGLGHEALLGLRQRVGMIFQH--FNLLNAKTVAQNIDWPLKITGRYSRQ 116 G V + + + L R+R+ ++FQ + TV + + L + G + Sbjct: 361 VGNVRLRDQVWSDLSDAQQRAERKRIQVVFQDPLASFDPRYTVERVLFEALGVAGYTDTE 420 Query: 117 QRAARVTELLQLVGLEQ-HRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPE 175 + AR ELL LV L+Q + + P +LSGGQ+QR+ IARALA P +L+CDE SALD Sbjct: 421 KTRARAIELLHLVRLDQSYLQRRPIELSGGQRQRIAIARALAPEPEVLICDEPVSALDVS 480 Query: 176 TTQAILRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQH 235 IL LL+D+ +LGL+ + I+H++ VI + DR+ V++ G V E G V ++F PQH Sbjct: 481 VQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESGGVREVFENPQH 540 Query: 236 AVTRSLLA 243 T++LL+ Sbjct: 541 IYTQTLLS 548 Score = 134 bits (336), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/304 (32%), Positives = 153/304 (50%), Gaps = 19/304 (6%) Query: 1 VIRIEQLHKTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 ++ +E LH + G +I + I+ + +GE ++G SG+GKS RTL L S Sbjct: 12 LVEVENLHVRFGHGGPAVI--KGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSS 69 Query: 61 ----RVLIDGEDITGLGHEALLGLR-QRVGMIFQHF--NLLNAKTVAQNIDWPLKITGRY 113 R+ DG+D+ +R +R+G + Q +L +TV + PLK+ + Sbjct: 70 LQADRLSFDGDDLRRFNERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAKL 129 Query: 114 SRQQRAARVTELLQLVGLEQHRD---QYPAQLSGGQKQRVGIARALANTPRLLLCDEATS 170 ++Q+R +V LL VG+ Q QYP QLSGG +QR IA A+A P LL+ DE T+ Sbjct: 130 TKQEREEKVIALLHSVGIPQPESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEPTT 189 Query: 171 ALDPETTQAILRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIF 230 ALD +L LL + R +++++H+ V+ + DRVAV+ HG + EQG + I Sbjct: 190 ALDAAVQAQVLDLLESL-RTPDKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDAIL 248 Query: 231 LRPQHAVTRSLLAESHAWDASDNLYQRRA---DGTLVRLTY---AGEVAAQPILSQLTAA 284 PQH T+SLL+ + + Q+ A DG L L G + PI+ ++ Sbjct: 249 HDPQHPYTKSLLSAVSSVQKRGPVRQKIAVTEDGHLATLPSELPPGVINNNPIVVEVNNL 308 Query: 285 TSAL 288 T Sbjct: 309 TKVF 312 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 148 bits (373), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 139/244 (56%), Gaps = 6/244 (2%) Query: 1 VIRIEQLHKTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +I ++++ K Y Q L D +A+G++ + G SG+GKSTLI+T+N LE G Sbjct: 1 MIELDKVSKWYGNFQ----VLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQG 56 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYSRQQRAA 120 ++ +DG + G L LR R+GM+FQ+F L ++++N+ + S Sbjct: 57 KITVDGISV-GDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATE 115 Query: 121 RVTELLQLVGLEQHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQAI 180 R + L VGL H+D++P QLSGGQ+QRV IARAL+ P +L DE TSALDPE + Sbjct: 116 RGLKYLDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEV 175 Query: 181 LRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHAVTRS 240 L +++ + ++ G+T++++THEM + + +RV ++ G + E + F + R Sbjct: 176 LDVMVGLAQE-GMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRARD 234 Query: 241 LLAE 244 LA+ Sbjct: 235 FLAK 238 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 742,369 Number of extensions: 29588 Number of successful extensions: 298 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 68 Length of query: 336 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 252 Effective length of database: 910,473 Effective search space: 229439196 Effective search space used: 229439196 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)