BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1451.p
         (265 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...   286   1e-78

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  286 bits (731), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/249 (55%), Positives = 181/249 (72%), Gaps = 3/249 (1%)

Query: 12  LGLMA---VLAASAHADNLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDIDVAKLVA 68
           +GLMA   +L   A AD L DIQK GV+++ VPQDF P+GSVT+D+  QGLDIDVA L+A
Sbjct: 8   IGLMAGALLLTNVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDIDVATLIA 67

Query: 69  KGLGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNNSVFGVA 128
           K LGVK EL+PV  ++R+ +LQT K+DL+IS++GKN EREKVIDFS  YAP+ N VFG A
Sbjct: 68  KKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFFNGVFGPA 127

Query: 129 AIKVSGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLISAYVSGQVQIVGT 188
             KV+ PADLA +T+GV R + EDL L+   P+S  IKRYEDNNG IS+++S QVQ+V T
Sbjct: 128 DQKVAAPADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSNQVQLVAT 187

Query: 189 GDFVAYALAEKTPNNKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKKSGELNGIV 248
           G+ +A A+  K P  KP  K++I  S C +G+NKGE  L+ KVN  +  +KK G LN + 
Sbjct: 188 GNVIAAAIIAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKKDGSLNTLT 247

Query: 249 KKWLNVPLP 257
           +KWL +PLP
Sbjct: 248 EKWLGLPLP 256


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 594,918
Number of extensions: 24504
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 183
Effective length of database: 917,867
Effective search space: 167969661
Effective search space used: 167969661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)