BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1450.p (516 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 429 e-121 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 424 e-120 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 411 e-116 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 396 e-111 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 395 e-111 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 429 bits (1104), Expect = e-121, Method: Compositional matrix adjust. Identities = 266/515 (51%), Positives = 354/515 (68%), Gaps = 4/515 (0%) Query: 4 LRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKMEYLM 63 ++ L++G RLA F +++ +LIV+ VI TR+ LD +S YPK A ++ + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 64 MNIARAARNIIILEDAAQMASNKKSIDKDLADYQKALEYL-RTHASTDESRRLTALADEQ 122 AR RN +++ DAAQ+ +I+K +AL+ L RT S + AL D Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTD-- 118 Query: 123 SKAYFAFTAD-VVDLGLKNQNVEGQRLLFGPRYKTQGELLTTLQQLVTLFEGQMHEATQA 181 ++ F D V L + E Q LLF Q E + L +LV MH+A + Sbjct: 119 ARGRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGED 178 Query: 182 AHDTYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADALDTARKVANGDLTKTITDH 241 AH+ + ++G+ + +AV++ +RSIT P++ A+ ARKVA+GDLT TI Sbjct: 179 AHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVT 238 Query: 242 APDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSARTEHQASSLEE 301 + DETG+LL AL++MN LV IV+ VR G DTIATAS +IA+GN DLS+RTE QASSLEE Sbjct: 239 SKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEE 298 Query: 302 TASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGIDASARKIVDI 361 TASSMEELTSTV+QN+ NAR + ++A A+++A +GG +V QVV TM I+ SA KIVDI Sbjct: 299 TASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDI 358 Query: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIGDS 421 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI DS Sbjct: 359 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDS 418 Query: 422 VEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQMDEVT 481 VEKV++G++LV AG TM E+V+SV +V I+G+I+AA +EQ GIEQ++QAV QMD+VT Sbjct: 419 VEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVT 478 Query: 482 QQNAALVEQAAAASRAMQGQAAELAEQVSIFRLPA 516 QQNAALVE+AAAA+ ++Q QA L++ VS+F+L A Sbjct: 479 QQNAALVEEAAAAAESLQDQANNLSQVVSVFKLDA 513 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 424 bits (1090), Expect = e-120, Method: Compositional matrix adjust. Identities = 251/515 (48%), Positives = 356/515 (69%), Gaps = 8/515 (1%) Query: 4 LRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKMEYLM 63 ++ L++G RL+ F ++++LL+V+ + TR+ L+ E+ G YPK A M+ + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 64 MNIARAARNIIILEDAAQMASNKKSIDKDLADYQKALEYLRTHASTDESRRLTA-LADEQ 122 IAR RN +++ + A + + I K AL L ++ R+ A L ++ Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 123 SKAYFAFTADVVDL---GLKNQNVEGQRLLFGPRYKTQGELLTTLQQLVTLFEGQMHEAT 179 SK + D + L G+K++ V LLF Q L ++ +L+ M ++ Sbjct: 121 SK-FLPLKDDFIKLASAGIKDEAVA---LLFAEVRPAQLSYLASIDKLIDYQNELMKKSG 176 Query: 180 QAAHDTYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADALDTARKVANGDLTKTIT 239 A+ + ++G+ + +AVL+ + A+ +RSIT P++ A+ ARKVA+GDLT +I Sbjct: 177 AEANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIV 236 Query: 240 DHAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSARTEHQASSL 299 + DETG+LL AL++MN L+ IV+ VR G DTIA+AS +IA+GN DLS+RTE QASSL Sbjct: 237 VESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSL 296 Query: 300 EETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGIDASARKIV 359 EETASSMEELTSTV+QN+ NAR + ++A +A+++A +GG +V +VV TM I+ SA+KIV Sbjct: 297 EETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIV 356 Query: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIG 419 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LIG Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIG 416 Query: 420 DSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQMDE 479 DSV+KV G++LV AG TM+E+V+SV +V I+ +I+AA +EQ GIEQ++QAV QMD+ Sbjct: 417 DSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQ 476 Query: 480 VTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 VTQQNAALVE+AAAA+ ++QGQA+ L++ V +F+L Sbjct: 477 VTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 411 bits (1056), Expect = e-116, Method: Compositional matrix adjust. Identities = 258/532 (48%), Positives = 346/532 (65%), Gaps = 38/532 (7%) Query: 3 PLRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKMEYL 62 + L++G RL FA +LLL+ + V+G+ R+ + Q ++ + + + + E+ Sbjct: 2 KISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHKE---RLTHEWY 58 Query: 63 MMNIARAARNIIILEDAAQMASNKKSIDKDLADYQKALEYLRTHAS-----------TDE 111 + N+A A R AA++ SN I K +QK +E S ++E Sbjct: 59 LGNVANAIRT------AARIRSNDAEIQKQ---FQKEMELQSQEISKLQNEIVALIHSEE 109 Query: 112 SRRLTALADEQSKAYFAFTADVVDLGLK---------NQNVEGQRLLFGPRYKTQGELLT 162 ++L ++ E+ AY DV L + + VE + Y + + Sbjct: 110 GKKLMSVVGEKRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVV 169 Query: 163 TLQQLVTLFEGQMHEATQAAHDTYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADA 222 + QQ++ A Y + TIL ++A++L A +SRSIT P+ A Sbjct: 170 SFQQVI------FQRAKADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYA 223 Query: 223 LDTARKVANGDLTKTITDHAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIA 282 + AR VA+GDL I + DETG+LL ALR+MN LV VS VRTG +TIATAS +IA Sbjct: 224 VSVARTVASGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIA 283 Query: 283 SGNQDLSARTEHQASSLEETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVG 342 +GN DLS+RTE QASSLEETASSMEELTSTV+QN+ NAR A ++A +A+ +A +GGE+V Sbjct: 284 AGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVS 343 Query: 343 QVVTTMDGIDASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRS 402 +VV TM+ I+ASA+KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+ Sbjct: 344 RVVDTMEQINASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRN 403 Query: 403 LAQRSAAAAKEIKVLIGDSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEE 462 LAQRSAAAAKEIK LIGDSV+KV+ G++LV +AG TM E+VQSV V I+ +I AA +E Sbjct: 404 LAQRSAAAAKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQE 463 Query: 463 QRAGIEQVHQAVAQMDEVTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 Q AGIEQV+QA+ QMD+VTQQNAALVE+AAAA+ ++ QAA+LAE VS+F+L Sbjct: 464 QSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKL 515 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust. Identities = 245/510 (48%), Positives = 326/510 (63%), Gaps = 4/510 (0%) Query: 7 LRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKMEYLMMNI 66 +++GARL GF +L L I I GI ++ ++ ++I S P ++ + Sbjct: 7 MKIGARLMLGFGVVLALSIAIAADGIRQLHAV--SAITRSMLELPIAKERMVSDWAAITK 64 Query: 67 ARAARNIIILE--DAAQMASNKKSIDKDLADYQKALEYLRTHASTDESRRLTALADEQSK 124 A AR I + + D A + K D + ++ L +TD+ + L A + K Sbjct: 65 ASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKILDVRK 124 Query: 125 AYFAFTADVVDLGLKNQNVEGQRLLFGPRYKTQGELLTTLQQLVTLFEGQMHEATQAAHD 184 ++ A V+ L + + E + + V L QM T D Sbjct: 125 SFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQLSD 184 Query: 185 TYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADALDTARKVANGDLTKTITDHAPD 244 S+ L + +A+ + G+ A ++ IT P+ A+D AR+VA GDLT I + D Sbjct: 185 VEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAESKD 244 Query: 245 ETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSARTEHQASSLEETAS 304 E G+LLAAL++MN L IV VR G +TI TAS EIA+GN DLS+RTE QASSLEETAS Sbjct: 245 ECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETAS 304 Query: 305 SMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGIDASARKIVDIIGV 364 SMEELTSTV+QN+ NAR A ++A +A+++A +GG++V QVV TM I+ S+RKIVDII V Sbjct: 305 SMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIISV 364 Query: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIGDSVEK 424 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA+AAKEIK LIGDSV K Sbjct: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVGK 424 Query: 425 VDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQMDEVTQQN 484 VD+G +LV +AG TM EIV S+ +V I+G+I+AA +EQ AGIEQ++QA+ QMD VTQQN Sbjct: 425 VDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQN 484 Query: 485 AALVEQAAAASRAMQGQAAELAEQVSIFRL 514 A+LVE+AAAA+ +MQ QA +L + V F+L Sbjct: 485 ASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 395 bits (1014), Expect = e-111, Method: Compositional matrix adjust. Identities = 236/517 (45%), Positives = 332/517 (64%), Gaps = 6/517 (1%) Query: 1 MNPLRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKME 60 M + +++ +L F + LL+VIT++ ++ L+ + IS YPK A ++ Sbjct: 1 MKMIANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQ 60 Query: 61 YLMMNIARAARNIIILEDAA---QMASNKKSIDKDLADYQKALEYLRTHASTDESRRLTA 117 + IA R+I++ D A Q+ S+ ++ DK + + LE LR A T+E R + Sbjct: 61 IEVNKIALNLRDIMLSSDPAKIKQLVSDTQASDKKM---NEGLEQLRAVAQTEEDNRYVS 117 Query: 118 LADEQSKAYFAFTADVVDLGLKNQNVEGQRLLFGPRYKTQGELLTTLQQLVTLFEGQMHE 177 A Y ++ L + E + L Q + L + M+ Sbjct: 118 AAIVARDQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNV 177 Query: 178 ATQAAHDTYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADALDTARKVANGDLTKT 237 A AA T + + TI+ + A +++LL + ++RSIT P+ A+ AR+VA GDL+ Sbjct: 178 AGDAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGP 237 Query: 238 ITDHAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSARTEHQAS 297 + +E G+L+AAL+ MN +L IV+ VR G TIA AS EIA GN DLS+RTE QAS Sbjct: 238 VFVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQAS 297 Query: 298 SLEETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGIDASARK 357 SLEETAS+MEELTSTV++N+ NA+ A ++A +AT++A QGG +V +V+ TM I+ S++K Sbjct: 298 SLEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKK 357 Query: 358 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVL 417 I DI GVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AA EIK L Sbjct: 358 IADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKAL 417 Query: 418 IGDSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQM 477 I DSV KVD+G++LV++AG T+ E+V SV ++ I+ IS A +EQ AGIEQV QA+ Q+ Sbjct: 418 IDDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQI 477 Query: 478 DEVTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 DE TQQNAALVEQ+AAA+++++ QA +L + VSIF+L Sbjct: 478 DEGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKL 514 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.125 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 671,515 Number of extensions: 18826 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 21 Length of query: 516 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 429 Effective length of database: 899,382 Effective search space: 385834878 Effective search space used: 385834878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)